miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18747 3' -56.6 NC_004682.1 + 30876 0.66 0.650677
Target:  5'- ---aGUCGCGUUGCGGGcgauggccGCUGuGGUGu -3'
miRNA:   3'- cuagUAGUGCAACGCCC--------UGGC-CCGCu -5'
18747 3' -56.6 NC_004682.1 + 39645 0.66 0.639745
Target:  5'- -uUCuUCuCGUUGCGGuAgCGGGCGGc -3'
miRNA:   3'- cuAGuAGuGCAACGCCcUgGCCCGCU- -5'
18747 3' -56.6 NC_004682.1 + 11190 0.66 0.606949
Target:  5'- uGAUCAUCACcugggGUcuCGGGGCaUGGGCGu -3'
miRNA:   3'- -CUAGUAGUG-----CAacGCCCUG-GCCCGCu -5'
18747 3' -56.6 NC_004682.1 + 15449 0.66 0.604766
Target:  5'- cGUCAUCGaggacucccGCGaGGGCUGGGCGGc -3'
miRNA:   3'- cUAGUAGUgcaa-----CGC-CCUGGCCCGCU- -5'
18747 3' -56.6 NC_004682.1 + 45754 0.67 0.542157
Target:  5'- gGGUCggUGCGggUGCGGGagcaGCCGGuGCGGc -3'
miRNA:   3'- -CUAGuaGUGCa-ACGCCC----UGGCC-CGCU- -5'
18747 3' -56.6 NC_004682.1 + 30497 0.68 0.500239
Target:  5'- --aCGUCuucgacuuCGUguacgGCGGGACCGGGUu- -3'
miRNA:   3'- cuaGUAGu-------GCAa----CGCCCUGGCCCGcu -5'
18747 3' -56.6 NC_004682.1 + 7637 0.68 0.476791
Target:  5'- cGUCAUCGagaacgagacgcagUGguggggUGCaGGACCGGGCGGc -3'
miRNA:   3'- cUAGUAGU--------------GCa-----ACGcCCUGGCCCGCU- -5'
18747 3' -56.6 NC_004682.1 + 42759 0.69 0.459815
Target:  5'- gGGUCAggACGUgccacGCGGGcagACCGGGCu- -3'
miRNA:   3'- -CUAGUagUGCAa----CGCCC---UGGCCCGcu -5'
18747 3' -56.6 NC_004682.1 + 33044 0.69 0.421191
Target:  5'- --cCAUCGCGgugGCGaGGGCCGGGa-- -3'
miRNA:   3'- cuaGUAGUGCaa-CGC-CCUGGCCCgcu -5'
18747 3' -56.6 NC_004682.1 + 6437 0.7 0.384591
Target:  5'- cGUCGUcCGCGUaGCGGaACCGGGCc- -3'
miRNA:   3'- cUAGUA-GUGCAaCGCCcUGGCCCGcu -5'
18747 3' -56.6 NC_004682.1 + 47744 0.73 0.273969
Target:  5'- cGAUgGUCGCGgugGUGGGguaGCCGGGCu- -3'
miRNA:   3'- -CUAgUAGUGCaa-CGCCC---UGGCCCGcu -5'
18747 3' -56.6 NC_004682.1 + 20942 0.74 0.241135
Target:  5'- gGAUCggCGCGUUcggcaggucugGCGGGAgCGGGUGGa -3'
miRNA:   3'- -CUAGuaGUGCAA-----------CGCCCUgGCCCGCU- -5'
18747 3' -56.6 NC_004682.1 + 47646 1.09 0.000743
Target:  5'- cGAUCAUCACGUUGCGGGACCGGGCGAu -3'
miRNA:   3'- -CUAGUAGUGCAACGCCCUGGCCCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.