miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18747 5' -55 NC_004682.1 + 17003 0.66 0.725834
Target:  5'- -cUCCGgGGUCuUCGAgCAGGGCCUc-- -3'
miRNA:   3'- gaAGGCgCUAG-GGCU-GUCUCGGAacu -5'
18747 5' -55 NC_004682.1 + 32826 0.66 0.715104
Target:  5'- --gCCGCG-UCCCGGCgcgucgaucAGAuCCUUGAc -3'
miRNA:   3'- gaaGGCGCuAGGGCUG---------UCUcGGAACU- -5'
18747 5' -55 NC_004682.1 + 44908 0.66 0.682463
Target:  5'- aUUCCGCGAUCuCCGAUugauuGAaccCCUUGu -3'
miRNA:   3'- gAAGGCGCUAG-GGCUGu----CUc--GGAACu -5'
18747 5' -55 NC_004682.1 + 42170 0.66 0.681365
Target:  5'- --cCCGCGAggccgcguccugcUCCUcgGugAGGGCCUUGu -3'
miRNA:   3'- gaaGGCGCU-------------AGGG--CugUCUCGGAACu -5'
18747 5' -55 NC_004682.1 + 7250 0.67 0.66044
Target:  5'- gUUUCGacauCGAcCUCGACGGAGUCUUGGu -3'
miRNA:   3'- gAAGGC----GCUaGGGCUGUCUCGGAACU- -5'
18747 5' -55 NC_004682.1 + 48981 0.67 0.66044
Target:  5'- --cUUGCGG-CCCGAUGGGGCCgggGAg -3'
miRNA:   3'- gaaGGCGCUaGGGCUGUCUCGGaa-CU- -5'
18747 5' -55 NC_004682.1 + 43340 0.68 0.583057
Target:  5'- -cUCCGCGAcccUCUCG-CGGGGCCa--- -3'
miRNA:   3'- gaAGGCGCU---AGGGCuGUCUCGGaacu -5'
18747 5' -55 NC_004682.1 + 46501 0.68 0.583057
Target:  5'- --cCUGCGAUCCaggcgCGGCGGuAGCuCUUGAg -3'
miRNA:   3'- gaaGGCGCUAGG-----GCUGUC-UCG-GAACU- -5'
18747 5' -55 NC_004682.1 + 46808 0.68 0.572094
Target:  5'- aCUUcCCGuCGAUCCgGGCAGAcCaCUUGAu -3'
miRNA:   3'- -GAA-GGC-GCUAGGgCUGUCUcG-GAACU- -5'
18747 5' -55 NC_004682.1 + 11677 0.7 0.497172
Target:  5'- cCUUCC-UGAcUCCCGAgCAGAGCCagGAc -3'
miRNA:   3'- -GAAGGcGCU-AGGGCU-GUCUCGGaaCU- -5'
18747 5' -55 NC_004682.1 + 41935 0.71 0.417433
Target:  5'- --aCCGUgggcagcgGGUCaCCGGCAGAGcCCUUGAu -3'
miRNA:   3'- gaaGGCG--------CUAG-GGCUGUCUC-GGAACU- -5'
18747 5' -55 NC_004682.1 + 47682 1.09 0.000997
Target:  5'- cCUUCCGCGAUCCCGACAGAGCCUUGAu -3'
miRNA:   3'- -GAAGGCGCUAGGGCUGUCUCGGAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.