Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18748 | 3' | -54.6 | NC_004682.1 | + | 49943 | 0.66 | 0.71112 |
Target: 5'- -cAGUGGgGCgugCGAUGCCuGUGGC-CGu -3' miRNA: 3'- guUCAUCgCGa--GCUGCGG-CAUCGaGU- -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 37537 | 0.66 | 0.72199 |
Target: 5'- -cAGUGGUGCUCGcucuCGCCGgu-CUCu -3' miRNA: 3'- guUCAUCGCGAGCu---GCGGCaucGAGu -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 50046 | 0.66 | 0.732767 |
Target: 5'- aGGGUGGCGUUCGGuCGgUCGcuuccuccUGGCUCGu -3' miRNA: 3'- gUUCAUCGCGAGCU-GC-GGC--------AUCGAGU- -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 10589 | 0.66 | 0.732767 |
Target: 5'- ----gAGCGCUCGACGCacugGGCa-- -3' miRNA: 3'- guucaUCGCGAGCUGCGgca-UCGagu -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 15335 | 0.66 | 0.72199 |
Target: 5'- uGGGaGGCGa-CGACGCCGUcguGCUCc -3' miRNA: 3'- gUUCaUCGCgaGCUGCGGCAu--CGAGu -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 30385 | 0.66 | 0.71112 |
Target: 5'- ----cAGCGUcgUGAuggUGCCGUGGCUCAu -3' miRNA: 3'- guucaUCGCGa-GCU---GCGGCAUCGAGU- -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 43291 | 0.67 | 0.666957 |
Target: 5'- cCGGGUcaaAGCGCUCGGCGgCGauGUUCu -3' miRNA: 3'- -GUUCA---UCGCGAGCUGCgGCauCGAGu -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 1119 | 0.67 | 0.644627 |
Target: 5'- gGGGcUGGCGCUUGACGUgagGGUUCAa -3' miRNA: 3'- gUUC-AUCGCGAGCUGCGgcaUCGAGU- -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 37738 | 0.67 | 0.655803 |
Target: 5'- --cGUAgauGCGCUCGACGCagccugCGUAGCcCGc -3' miRNA: 3'- guuCAU---CGCGAGCUGCG------GCAUCGaGU- -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 1525 | 0.68 | 0.611068 |
Target: 5'- cCGAGUGGgaGUUCGACaucgucgggGCCGUGGC-CAc -3' miRNA: 3'- -GUUCAUCg-CGAGCUG---------CGGCAUCGaGU- -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 45901 | 0.68 | 0.577678 |
Target: 5'- gCGAGUAGCGCacUCGGgcuCGCCGUcguccggguccuGGUUCu -3' miRNA: 3'- -GUUCAUCGCG--AGCU---GCGGCA------------UCGAGu -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 39343 | 0.68 | 0.566629 |
Target: 5'- ---uUGGCGCggCGGCaGCCGUAGCa-- -3' miRNA: 3'- guucAUCGCGa-GCUG-CGGCAUCGagu -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 38739 | 0.69 | 0.501756 |
Target: 5'- cCAGGUAgGCGUUgcccugcggaccCGACGCCGUGG-UCAg -3' miRNA: 3'- -GUUCAU-CGCGA------------GCUGCGGCAUCgAGU- -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 42522 | 0.7 | 0.480841 |
Target: 5'- ----aGGUGCUCGAUGUacccgaCGUGGCUCGg -3' miRNA: 3'- guucaUCGCGAGCUGCG------GCAUCGAGU- -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 8853 | 0.7 | 0.480841 |
Target: 5'- uGAGUccgAGCGCcggccCGACGCCGUAGgCgUCAc -3' miRNA: 3'- gUUCA---UCGCGa----GCUGCGGCAUC-G-AGU- -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 35972 | 0.72 | 0.383445 |
Target: 5'- -uGGUcgaGGCGUUCG-CGCCGUaguacAGCUCAa -3' miRNA: 3'- guUCA---UCGCGAGCuGCGGCA-----UCGAGU- -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 43440 | 0.73 | 0.323522 |
Target: 5'- ----gGGgGCUCGAUGCCGUAGgUCu -3' miRNA: 3'- guucaUCgCGAGCUGCGGCAUCgAGu -5' |
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18748 | 3' | -54.6 | NC_004682.1 | + | 49542 | 1.08 | 0.001102 |
Target: 5'- cCAAGUAGCGCUCGACGCCGUAGCUCAu -3' miRNA: 3'- -GUUCAUCGCGAGCUGCGGCAUCGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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