miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 33483 0.66 0.588468
Target:  5'- cGCcguuGCCGCCGcCAGCGgccugcugCggGGCCa -3'
miRNA:   3'- aCGcu--UGGUGGCaGUCGCa-------GagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 33892 0.7 0.368868
Target:  5'- aGCGAAUCgggcaagcGCCGUUGGCGcaguccucaucgacUCaUCGGCCa -3'
miRNA:   3'- aCGCUUGG--------UGGCAGUCGC--------------AG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 34277 0.69 0.425422
Target:  5'- -uCGAGCCugguugGCCGUCAGgGUCUUGuCCu -3'
miRNA:   3'- acGCUUGG------UGGCAGUCgCAGAGCcGG- -5'
18748 5' -57.4 NC_004682.1 + 34500 0.71 0.330162
Target:  5'- gUGCGAACUGCguagCAGCGUggucgaccucUUCGGCCa -3'
miRNA:   3'- -ACGCUUGGUGgca-GUCGCA----------GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 34510 0.68 0.482802
Target:  5'- cGCGGcCCcaguccuucauGCCGUCgcggagcagggagAGCGUCUgGGCUg -3'
miRNA:   3'- aCGCUuGG-----------UGGCAG-------------UCGCAGAgCCGG- -5'
18748 5' -57.4 NC_004682.1 + 35546 0.67 0.545772
Target:  5'- cGCGAACuCGCgGUCGGCcUCUUcGCg -3'
miRNA:   3'- aCGCUUG-GUGgCAGUCGcAGAGcCGg -5'
18748 5' -57.4 NC_004682.1 + 36148 0.68 0.444426
Target:  5'- cGCGAcgugugGCCgaugcugucccaGCCgGUCGGCGUCcacaGGCCg -3'
miRNA:   3'- aCGCU------UGG------------UGG-CAGUCGCAGag--CCGG- -5'
18748 5' -57.4 NC_004682.1 + 36365 0.66 0.567017
Target:  5'- cUGCGGACCcgguucaucUCGUCGGUGagggcCUCGGUCc -3'
miRNA:   3'- -ACGCUUGGu--------GGCAGUCGCa----GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 36568 0.74 0.215593
Target:  5'- cUGCGGcuuGCCGCCGUCGGaGUCguaGGUCu -3'
miRNA:   3'- -ACGCU---UGGUGGCAGUCgCAGag-CCGG- -5'
18748 5' -57.4 NC_004682.1 + 36960 0.74 0.221268
Target:  5'- cGUGAACCgGCC-UCGGUggaucggaaccGUCUCGGCCu -3'
miRNA:   3'- aCGCUUGG-UGGcAGUCG-----------CAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 36989 0.71 0.299644
Target:  5'- cGCGGGCCugUGcCAG-GUuggcCUCGGCCu -3'
miRNA:   3'- aCGCUUGGugGCaGUCgCA----GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 38145 0.69 0.406909
Target:  5'- cGCGaAGCCGCCGUUGGCccuGUgUCGGaUCu -3'
miRNA:   3'- aCGC-UUGGUGGCAGUCG---CAgAGCC-GG- -5'
18748 5' -57.4 NC_004682.1 + 38755 0.67 0.504118
Target:  5'- cUGCGGACCcgacGCCGuggUCAGguugGUgUCGGCCn -3'
miRNA:   3'- -ACGCUUGG----UGGC---AGUCg---CAgAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 38792 0.74 0.221268
Target:  5'- aGCGAcACgACC-UUGGuCGUCUCGGCCa -3'
miRNA:   3'- aCGCU-UGgUGGcAGUC-GCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 38879 0.66 0.610061
Target:  5'- aGCGcGAUgGCC-UCGGCGaUCUUGGUCc -3'
miRNA:   3'- aCGC-UUGgUGGcAGUCGC-AGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 39309 0.69 0.416102
Target:  5'- aGCGggUUGCCGuUCAGCGggaggUGGCUg -3'
miRNA:   3'- aCGCuuGGUGGC-AGUCGCaga--GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 39679 0.69 0.406909
Target:  5'- gGUGAACaACUGcggCAGCGUCaucCGGCCc -3'
miRNA:   3'- aCGCUUGgUGGCa--GUCGCAGa--GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 40259 0.66 0.567017
Target:  5'- aGCGGggucgucuuugACCGCCccgaugaucuGUCGGCGUC-CuGCCa -3'
miRNA:   3'- aCGCU-----------UGGUGG----------CAGUCGCAGaGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 40908 0.66 0.599251
Target:  5'- cUGCGucuGCCuggcggcguaCGUCGGCGUCgacggaUCGcGCCa -3'
miRNA:   3'- -ACGCu--UGGug--------GCAGUCGCAG------AGC-CGG- -5'
18748 5' -57.4 NC_004682.1 + 40983 0.67 0.556365
Target:  5'- uUGCGAGCCAgCGgccUGGCcagCUCGGUg -3'
miRNA:   3'- -ACGCUUGGUgGCa--GUCGca-GAGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.