miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 38792 0.74 0.221268
Target:  5'- aGCGAcACgACC-UUGGuCGUCUCGGCCa -3'
miRNA:   3'- aCGCU-UGgUGGcAGUC-GCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 38755 0.67 0.504118
Target:  5'- cUGCGGACCcgacGCCGuggUCAGguugGUgUCGGCCn -3'
miRNA:   3'- -ACGCUUGG----UGGC---AGUCg---CAgAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 38145 0.69 0.406909
Target:  5'- cGCGaAGCCGCCGUUGGCccuGUgUCGGaUCu -3'
miRNA:   3'- aCGC-UUGGUGGCAGUCG---CAgAGCC-GG- -5'
18748 5' -57.4 NC_004682.1 + 36989 0.71 0.299644
Target:  5'- cGCGGGCCugUGcCAG-GUuggcCUCGGCCu -3'
miRNA:   3'- aCGCUUGGugGCaGUCgCA----GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 36960 0.74 0.221268
Target:  5'- cGUGAACCgGCC-UCGGUggaucggaaccGUCUCGGCCu -3'
miRNA:   3'- aCGCUUGG-UGGcAGUCG-----------CAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 36568 0.74 0.215593
Target:  5'- cUGCGGcuuGCCGCCGUCGGaGUCguaGGUCu -3'
miRNA:   3'- -ACGCU---UGGUGGCAGUCgCAGag-CCGG- -5'
18748 5' -57.4 NC_004682.1 + 36365 0.66 0.567017
Target:  5'- cUGCGGACCcgguucaucUCGUCGGUGagggcCUCGGUCc -3'
miRNA:   3'- -ACGCUUGGu--------GGCAGUCGCa----GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 36148 0.68 0.444426
Target:  5'- cGCGAcgugugGCCgaugcugucccaGCCgGUCGGCGUCcacaGGCCg -3'
miRNA:   3'- aCGCU------UGG------------UGG-CAGUCGCAGag--CCGG- -5'
18748 5' -57.4 NC_004682.1 + 35546 0.67 0.545772
Target:  5'- cGCGAACuCGCgGUCGGCcUCUUcGCg -3'
miRNA:   3'- aCGCUUG-GUGgCAGUCGcAGAGcCGg -5'
18748 5' -57.4 NC_004682.1 + 34510 0.68 0.482802
Target:  5'- cGCGGcCCcaguccuucauGCCGUCgcggagcagggagAGCGUCUgGGCUg -3'
miRNA:   3'- aCGCUuGG-----------UGGCAG-------------UCGCAGAgCCGG- -5'
18748 5' -57.4 NC_004682.1 + 34500 0.71 0.330162
Target:  5'- gUGCGAACUGCguagCAGCGUggucgaccucUUCGGCCa -3'
miRNA:   3'- -ACGCUUGGUGgca-GUCGCA----------GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 34277 0.69 0.425422
Target:  5'- -uCGAGCCugguugGCCGUCAGgGUCUUGuCCu -3'
miRNA:   3'- acGCUUGG------UGGCAGUCgCAGAGCcGG- -5'
18748 5' -57.4 NC_004682.1 + 33892 0.7 0.368868
Target:  5'- aGCGAAUCgggcaagcGCCGUUGGCGcaguccucaucgacUCaUCGGCCa -3'
miRNA:   3'- aCGCUUGG--------UGGCAGUCGC--------------AG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 33483 0.66 0.588468
Target:  5'- cGCcguuGCCGCCGcCAGCGgccugcugCggGGCCa -3'
miRNA:   3'- aCGcu--UGGUGGCaGUCGCa-------GagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 32578 0.66 0.610061
Target:  5'- cUGCGcGgCACCGaCAGCcagGUCgauacCGGCCu -3'
miRNA:   3'- -ACGCuUgGUGGCaGUCG---CAGa----GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 31216 0.67 0.524788
Target:  5'- cUGCGAGaCCGCCGgcacCAGCGggaUCaGCUu -3'
miRNA:   3'- -ACGCUU-GGUGGCa---GUCGCag-AGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 30227 0.66 0.599251
Target:  5'- cGUGAACCcggccucaugcaGCCGgaUCAGCGcCUcccCGGUCa -3'
miRNA:   3'- aCGCUUGG------------UGGC--AGUCGCaGA---GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 29687 0.74 0.204616
Target:  5'- gGUGAGCUGCgCGUCcuggAGCGUCUucuUGGCCa -3'
miRNA:   3'- aCGCUUGGUG-GCAG----UCGCAGA---GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 29502 0.66 0.588468
Target:  5'- aGCcagGAGCCGCCGaaGGCGgUCUCacuGCCc -3'
miRNA:   3'- aCG---CUUGGUGGCagUCGC-AGAGc--CGG- -5'
18748 5' -57.4 NC_004682.1 + 27415 0.68 0.444426
Target:  5'- gGCGGcacaAUCGCCGUCGGCGcacuggcguUCUcgcugucguucaCGGCCc -3'
miRNA:   3'- aCGCU----UGGUGGCAGUCGC---------AGA------------GCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.