Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18748 | 5' | -57.4 | NC_004682.1 | + | 38755 | 0.67 | 0.504118 |
Target: 5'- cUGCGGACCcgacGCCGuggUCAGguugGUgUCGGCCn -3' miRNA: 3'- -ACGCUUGG----UGGC---AGUCg---CAgAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 47126 | 0.68 | 0.483808 |
Target: 5'- cGCGAccguauUCGCCGUCAGCGacgaCUCccGCCg -3' miRNA: 3'- aCGCUu-----GGUGGCAGUCGCa---GAGc-CGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 34510 | 0.68 | 0.482802 |
Target: 5'- cGCGGcCCcaguccuucauGCCGUCgcggagcagggagAGCGUCUgGGCUg -3' miRNA: 3'- aCGCUuGG-----------UGGCAG-------------UCGCAGAgCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 36148 | 0.68 | 0.444426 |
Target: 5'- cGCGAcgugugGCCgaugcugucccaGCCgGUCGGCGUCcacaGGCCg -3' miRNA: 3'- aCGCU------UGG------------UGG-CAGUCGCAGag--CCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 34277 | 0.69 | 0.425422 |
Target: 5'- -uCGAGCCugguugGCCGUCAGgGUCUUGuCCu -3' miRNA: 3'- acGCUUGG------UGGCAGUCgCAGAGCcGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 39309 | 0.69 | 0.416102 |
Target: 5'- aGCGggUUGCCGuUCAGCGggaggUGGCUg -3' miRNA: 3'- aCGCuuGGUGGC-AGUCGCaga--GCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 35546 | 0.67 | 0.545772 |
Target: 5'- cGCGAACuCGCgGUCGGCcUCUUcGCg -3' miRNA: 3'- aCGCUUG-GUGgCAGUCGcAGAGcCGg -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 25976 | 0.67 | 0.56062 |
Target: 5'- cGCGAACgggaCACCGUUcuuguagagcaucggAGCGgUCUUccaGGCCg -3' miRNA: 3'- aCGCUUG----GUGGCAG---------------UCGC-AGAG---CCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 12958 | 0.66 | 0.61439 |
Target: 5'- cGCGGA-CAUCG-CGGCGcguucucgggguacCUCGGCCa -3' miRNA: 3'- aCGCUUgGUGGCaGUCGCa-------------GAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 38879 | 0.66 | 0.610061 |
Target: 5'- aGCGcGAUgGCC-UCGGCGaUCUUGGUCc -3' miRNA: 3'- aCGC-UUGgUGGcAGUCGC-AGAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 6834 | 0.66 | 0.610061 |
Target: 5'- cGCGuAAgCACCG-CAGCGugUCUCaGCUc -3' miRNA: 3'- aCGC-UUgGUGGCaGUCGC--AGAGcCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 32578 | 0.66 | 0.610061 |
Target: 5'- cUGCGcGgCACCGaCAGCcagGUCgauacCGGCCu -3' miRNA: 3'- -ACGCuUgGUGGCaGUCG---CAGa----GCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 40908 | 0.66 | 0.599251 |
Target: 5'- cUGCGucuGCCuggcggcguaCGUCGGCGUCgacggaUCGcGCCa -3' miRNA: 3'- -ACGCu--UGGug--------GCAGUCGCAG------AGC-CGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 26630 | 0.66 | 0.599251 |
Target: 5'- gGCGAcgguGCCcgagauGCUcugguagucgGUCAGCGUCUC-GCCa -3' miRNA: 3'- aCGCU----UGG------UGG----------CAGUCGCAGAGcCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 9457 | 0.66 | 0.588468 |
Target: 5'- gGCGAucCCGCUGUcCGGUGUCaagGGUCa -3' miRNA: 3'- aCGCUu-GGUGGCA-GUCGCAGag-CCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 45776 | 0.66 | 0.588468 |
Target: 5'- aGcCGGugCGgCGUCGGCGUacgcguagcccUUCGGCg -3' miRNA: 3'- aC-GCUugGUgGCAGUCGCA-----------GAGCCGg -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 29502 | 0.66 | 0.588468 |
Target: 5'- aGCcagGAGCCGCCGaaGGCGgUCUCacuGCCc -3' miRNA: 3'- aCG---CUUGGUGGCagUCGC-AGAGc--CGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 46325 | 0.66 | 0.577721 |
Target: 5'- cUGCGGucguagggaaguACCuucuCCGUCAucGCGUCa-GGCCc -3' miRNA: 3'- -ACGCU------------UGGu---GGCAGU--CGCAGagCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 47349 | 0.66 | 0.567017 |
Target: 5'- gGCGGGggguUCACCGUCcGC-UCcCGGCCc -3' miRNA: 3'- aCGCUU----GGUGGCAGuCGcAGaGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 40259 | 0.66 | 0.567017 |
Target: 5'- aGCGGggucgucuuugACCGCCccgaugaucuGUCGGCGUC-CuGCCa -3' miRNA: 3'- aCGCU-----------UGGUGG----------CAGUCGCAGaGcCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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