miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 38755 0.67 0.504118
Target:  5'- cUGCGGACCcgacGCCGuggUCAGguugGUgUCGGCCn -3'
miRNA:   3'- -ACGCUUGG----UGGC---AGUCg---CAgAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 18747 0.67 0.504118
Target:  5'- cGUGAACC-CCG-CAaccGUGUCUCGGaUCg -3'
miRNA:   3'- aCGCUUGGuGGCaGU---CGCAGAGCC-GG- -5'
18748 5' -57.4 NC_004682.1 + 16228 0.67 0.535243
Target:  5'- cGUGGGCCACC-UCGGCGU---GGCg -3'
miRNA:   3'- aCGCUUGGUGGcAGUCGCAgagCCGg -5'
18748 5' -57.4 NC_004682.1 + 47349 0.66 0.567017
Target:  5'- gGCGGGggguUCACCGUCcGC-UCcCGGCCc -3'
miRNA:   3'- aCGCUU----GGUGGCAGuCGcAGaGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 23116 0.73 0.245252
Target:  5'- gGCGAgacagcAUCACCGUCAGgugaGUUgCGGCCa -3'
miRNA:   3'- aCGCU------UGGUGGCAGUCg---CAGaGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 39309 0.69 0.416102
Target:  5'- aGCGggUUGCCGuUCAGCGggaggUGGCUg -3'
miRNA:   3'- aCGCuuGGUGGC-AGUCGCaga--GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 25735 0.67 0.51441
Target:  5'- -cUGGACCACaaCGUC--CGUCUCGGUCa -3'
miRNA:   3'- acGCUUGGUG--GCAGucGCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 46325 0.66 0.577721
Target:  5'- cUGCGGucguagggaaguACCuucuCCGUCAucGCGUCa-GGCCc -3'
miRNA:   3'- -ACGCU------------UGGu---GGCAGU--CGCAGagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 34277 0.69 0.425422
Target:  5'- -uCGAGCCugguugGCCGUCAGgGUCUUGuCCu -3'
miRNA:   3'- acGCUUGG------UGGCAGUCgCAGAGCcGG- -5'
18748 5' -57.4 NC_004682.1 + 29502 0.66 0.588468
Target:  5'- aGCcagGAGCCGCCGaaGGCGgUCUCacuGCCc -3'
miRNA:   3'- aCG---CUUGGUGGCagUCGC-AGAGc--CGG- -5'
18748 5' -57.4 NC_004682.1 + 48833 0.67 0.51441
Target:  5'- --gGGugCGCCGUCGGCcUCggggGGCCa -3'
miRNA:   3'- acgCUugGUGGCAGUCGcAGag--CCGG- -5'
18748 5' -57.4 NC_004682.1 + 47126 0.68 0.483808
Target:  5'- cGCGAccguauUCGCCGUCAGCGacgaCUCccGCCg -3'
miRNA:   3'- aCGCUu-----GGUGGCAGUCGCa---GAGc-CGG- -5'
18748 5' -57.4 NC_004682.1 + 20484 0.67 0.534194
Target:  5'- gGCGAGCCAgaacgggcacaUCGUCaccccgaAGgGUCgUCGGCUg -3'
miRNA:   3'- aCGCUUGGU-----------GGCAG-------UCgCAG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 6113 0.67 0.535243
Target:  5'- cGUG-GCCACCGgCGGCG--UCGGCa -3'
miRNA:   3'- aCGCuUGGUGGCaGUCGCagAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 12801 0.67 0.535243
Target:  5'- -cUGAACgCGCUGUCGGCGcugaggcacCUCGGCa -3'
miRNA:   3'- acGCUUG-GUGGCAGUCGCa--------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 40259 0.66 0.567017
Target:  5'- aGCGGggucgucuuugACCGCCccgaugaucuGUCGGCGUC-CuGCCa -3'
miRNA:   3'- aCGCU-----------UGGUGG----------CAGUCGCAGaGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 41266 0.75 0.189061
Target:  5'- aUGCGAGCCagguACgCGUCgaacAGCGUCU-GGCCg -3'
miRNA:   3'- -ACGCUUGG----UG-GCAG----UCGCAGAgCCGG- -5'
18748 5' -57.4 NC_004682.1 + 10753 0.73 0.245252
Target:  5'- cUGCGGGCCACa--CAGCGccUCUCGGgCg -3'
miRNA:   3'- -ACGCUUGGUGgcaGUCGC--AGAGCCgG- -5'
18748 5' -57.4 NC_004682.1 + 36989 0.71 0.299644
Target:  5'- cGCGGGCCugUGcCAG-GUuggcCUCGGCCu -3'
miRNA:   3'- aCGCUUGGugGCaGUCgCA----GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 38145 0.69 0.406909
Target:  5'- cGCGaAGCCGCCGUUGGCccuGUgUCGGaUCu -3'
miRNA:   3'- aCGC-UUGGUGGCAGUCG---CAgAGCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.