miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 40259 0.66 0.567017
Target:  5'- aGCGGggucgucuuugACCGCCccgaugaucuGUCGGCGUC-CuGCCa -3'
miRNA:   3'- aCGCU-----------UGGUGG----------CAGUCGCAGaGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 26334 0.66 0.567017
Target:  5'- gGCGGuguacgucuucgACCGCCuguuccccuGUCGGCG-CgcagCGGCCu -3'
miRNA:   3'- aCGCU------------UGGUGG---------CAGUCGCaGa---GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 25976 0.67 0.56062
Target:  5'- cGCGAACgggaCACCGUUcuuguagagcaucggAGCGgUCUUccaGGCCg -3'
miRNA:   3'- aCGCUUG----GUGGCAG---------------UCGC-AGAG---CCGG- -5'
18748 5' -57.4 NC_004682.1 + 40983 0.67 0.556365
Target:  5'- uUGCGAGCCAgCGgccUGGCcagCUCGGUg -3'
miRNA:   3'- -ACGCUUGGUgGCa--GUCGca-GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 18552 0.67 0.546828
Target:  5'- cGCaGGAUCugCGgaagagcauggcgggCAGCGUCUCuGGCg -3'
miRNA:   3'- aCG-CUUGGugGCa--------------GUCGCAGAG-CCGg -5'
18748 5' -57.4 NC_004682.1 + 35546 0.67 0.545772
Target:  5'- cGCGAACuCGCgGUCGGCcUCUUcGCg -3'
miRNA:   3'- aCGCUUG-GUGgCAGUCGcAGAGcCGg -5'
18748 5' -57.4 NC_004682.1 + 41396 0.67 0.545772
Target:  5'- aGCgGGAUCGCCuuGUCGGCGUCgUUGuaGCCu -3'
miRNA:   3'- aCG-CUUGGUGG--CAGUCGCAG-AGC--CGG- -5'
18748 5' -57.4 NC_004682.1 + 8633 0.67 0.544716
Target:  5'- aGCGGcaagaagauugacGCCGCCGUCuGCGcgguccucgcgUUCGGCg -3'
miRNA:   3'- aCGCU-------------UGGUGGCAGuCGCa----------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 6113 0.67 0.535243
Target:  5'- cGUG-GCCACCGgCGGCG--UCGGCa -3'
miRNA:   3'- aCGCuUGGUGGCaGUCGCagAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 16228 0.67 0.535243
Target:  5'- cGUGGGCCACC-UCGGCGU---GGCg -3'
miRNA:   3'- aCGCUUGGUGGcAGUCGCAgagCCGg -5'
18748 5' -57.4 NC_004682.1 + 12801 0.67 0.535243
Target:  5'- -cUGAACgCGCUGUCGGCGcugaggcacCUCGGCa -3'
miRNA:   3'- acGCUUG-GUGGCAGUCGCa--------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 25235 0.67 0.535243
Target:  5'- cGCGAGCCggagACCGgCAagguagcccaccGCGUCaaGGCCc -3'
miRNA:   3'- aCGCUUGG----UGGCaGU------------CGCAGagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 20484 0.67 0.534194
Target:  5'- gGCGAGCCAgaacgggcacaUCGUCaccccgaAGgGUCgUCGGCUg -3'
miRNA:   3'- aCGCUUGGU-----------GGCAG-------UCgCAG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 24525 0.67 0.532099
Target:  5'- cGCGGACUACCGgggcuggggcuucaUCAGCucuacGUCgaaCGGCg -3'
miRNA:   3'- aCGCUUGGUGGC--------------AGUCG-----CAGa--GCCGg -5'
18748 5' -57.4 NC_004682.1 + 31216 0.67 0.524788
Target:  5'- cUGCGAGaCCGCCGgcacCAGCGggaUCaGCUu -3'
miRNA:   3'- -ACGCUU-GGUGGCa---GUCGCag-AGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 21900 0.67 0.51441
Target:  5'- gGCGuucaCGCUGUCAGCGUUccUGGCg -3'
miRNA:   3'- aCGCuug-GUGGCAGUCGCAGa-GCCGg -5'
18748 5' -57.4 NC_004682.1 + 25735 0.67 0.51441
Target:  5'- -cUGGACCACaaCGUC--CGUCUCGGUCa -3'
miRNA:   3'- acGCUUGGUG--GCAGucGCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 48833 0.67 0.51441
Target:  5'- --gGGugCGCCGUCGGCcUCggggGGCCa -3'
miRNA:   3'- acgCUugGUGGCAGUCGcAGag--CCGG- -5'
18748 5' -57.4 NC_004682.1 + 42490 0.67 0.504118
Target:  5'- cUGCG-GCCACC-UCAGCGUCgaacagaCGGaUCa -3'
miRNA:   3'- -ACGCuUGGUGGcAGUCGCAGa------GCC-GG- -5'
18748 5' -57.4 NC_004682.1 + 18747 0.67 0.504118
Target:  5'- cGUGAACC-CCG-CAaccGUGUCUCGGaUCg -3'
miRNA:   3'- aCGCUUGGuGGCaGU---CGCAGAGCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.