miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1875 3' -57.4 NC_001347.2 + 192274 0.66 0.9317
Target:  5'- -cGcgCGGCC-UCGGCGGCGGg---- -3'
miRNA:   3'- gaCaaGCUGGuGGCCGCCGCCaacua -5'
1875 3' -57.4 NC_001347.2 + 90836 0.66 0.9214
Target:  5'- -gGUgCGACUGCaCGGCGGCGaGgcGGUg -3'
miRNA:   3'- gaCAaGCUGGUG-GCCGCCGC-CaaCUA- -5'
1875 3' -57.4 NC_001347.2 + 104750 0.66 0.915915
Target:  5'- ---cUCGGCCGCCGGCcGCGugUGAg -3'
miRNA:   3'- gacaAGCUGGUGGCCGcCGCcaACUa -5'
1875 3' -57.4 NC_001347.2 + 127203 0.66 0.904282
Target:  5'- gCUGcaCGACCACCGGCuGUGGc---- -3'
miRNA:   3'- -GACaaGCUGGUGGCCGcCGCCaacua -5'
1875 3' -57.4 NC_001347.2 + 153028 0.67 0.898137
Target:  5'- -cGUUCGAUC-UUGGCGGCcgacgagaGGUUGAg -3'
miRNA:   3'- gaCAAGCUGGuGGCCGCCG--------CCAACUa -5'
1875 3' -57.4 NC_001347.2 + 50022 0.67 0.891776
Target:  5'- uCUG-UCGACCGCa-GCGGUGGcUGGa -3'
miRNA:   3'- -GACaAGCUGGUGgcCGCCGCCaACUa -5'
1875 3' -57.4 NC_001347.2 + 164123 0.67 0.878419
Target:  5'- cCUGaUCGACCGaCGGCGGCacUUGGUa -3'
miRNA:   3'- -GACaAGCUGGUgGCCGCCGccAACUA- -5'
1875 3' -57.4 NC_001347.2 + 141689 0.68 0.833597
Target:  5'- cCUGggCGACCugAgCGGCGGCGGc---- -3'
miRNA:   3'- -GACaaGCUGG--UgGCCGCCGCCaacua -5'
1875 3' -57.4 NC_001347.2 + 56599 0.68 0.833597
Target:  5'- ----aCGACCGCggUGGCGGCGG-UGGUu -3'
miRNA:   3'- gacaaGCUGGUG--GCCGCCGCCaACUA- -5'
1875 3' -57.4 NC_001347.2 + 73631 0.69 0.800221
Target:  5'- ---cUCGGCCGCCgccgccacccauGGCGGCGGgucgUGGc -3'
miRNA:   3'- gacaAGCUGGUGG------------CCGCCGCCa---ACUa -5'
1875 3' -57.4 NC_001347.2 + 112407 0.71 0.698298
Target:  5'- -gGggCGACCACgucagacggggCGGCGGCGGgucccgUGAUg -3'
miRNA:   3'- gaCaaGCUGGUG-----------GCCGCCGCCa-----ACUA- -5'
1875 3' -57.4 NC_001347.2 + 164578 0.71 0.698298
Target:  5'- gCUGcgCGACaCGgUGGCGGCGGUgGAg -3'
miRNA:   3'- -GACaaGCUG-GUgGCCGCCGCCAaCUa -5'
1875 3' -57.4 NC_001347.2 + 105009 0.73 0.550992
Target:  5'- cCUGaaCGACCGCCGGUGGCGucagUGGc -3'
miRNA:   3'- -GACaaGCUGGUGGCCGCCGCca--ACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.