Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1875 | 3' | -57.4 | NC_001347.2 | + | 90836 | 0.66 | 0.9214 |
Target: 5'- -gGUgCGACUGCaCGGCGGCGaGgcGGUg -3' miRNA: 3'- gaCAaGCUGGUG-GCCGCCGC-CaaCUA- -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 192274 | 0.66 | 0.9317 |
Target: 5'- -cGcgCGGCC-UCGGCGGCGGg---- -3' miRNA: 3'- gaCaaGCUGGuGGCCGCCGCCaacua -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 104750 | 0.66 | 0.915915 |
Target: 5'- ---cUCGGCCGCCGGCcGCGugUGAg -3' miRNA: 3'- gacaAGCUGGUGGCCGcCGCcaACUa -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 127203 | 0.66 | 0.904282 |
Target: 5'- gCUGcaCGACCACCGGCuGUGGc---- -3' miRNA: 3'- -GACaaGCUGGUGGCCGcCGCCaacua -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 153028 | 0.67 | 0.898137 |
Target: 5'- -cGUUCGAUC-UUGGCGGCcgacgagaGGUUGAg -3' miRNA: 3'- gaCAAGCUGGuGGCCGCCG--------CCAACUa -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 50022 | 0.67 | 0.891776 |
Target: 5'- uCUG-UCGACCGCa-GCGGUGGcUGGa -3' miRNA: 3'- -GACaAGCUGGUGgcCGCCGCCaACUa -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 164123 | 0.67 | 0.878419 |
Target: 5'- cCUGaUCGACCGaCGGCGGCacUUGGUa -3' miRNA: 3'- -GACaAGCUGGUgGCCGCCGccAACUA- -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 141689 | 0.68 | 0.833597 |
Target: 5'- cCUGggCGACCugAgCGGCGGCGGc---- -3' miRNA: 3'- -GACaaGCUGG--UgGCCGCCGCCaacua -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 56599 | 0.68 | 0.833597 |
Target: 5'- ----aCGACCGCggUGGCGGCGG-UGGUu -3' miRNA: 3'- gacaaGCUGGUG--GCCGCCGCCaACUA- -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 73631 | 0.69 | 0.800221 |
Target: 5'- ---cUCGGCCGCCgccgccacccauGGCGGCGGgucgUGGc -3' miRNA: 3'- gacaAGCUGGUGG------------CCGCCGCCa---ACUa -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 112407 | 0.71 | 0.698298 |
Target: 5'- -gGggCGACCACgucagacggggCGGCGGCGGgucccgUGAUg -3' miRNA: 3'- gaCaaGCUGGUG-----------GCCGCCGCCa-----ACUA- -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 164578 | 0.71 | 0.698298 |
Target: 5'- gCUGcgCGACaCGgUGGCGGCGGUgGAg -3' miRNA: 3'- -GACaaGCUG-GUgGCCGCCGCCAaCUa -5' |
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1875 | 3' | -57.4 | NC_001347.2 | + | 105009 | 0.73 | 0.550992 |
Target: 5'- cCUGaaCGACCGCCGGUGGCGucagUGGc -3' miRNA: 3'- -GACaaGCUGGUGGCCGCCGCca--ACUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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