miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18752 3' -54.2 NC_004683.1 + 28713 0.66 0.768421
Target:  5'- cCGUgucGACGAGCaUGgcUGCGGCACUc- -3'
miRNA:   3'- -GCGaa-CUGCUCGaAC--ACGUCGUGGag -5'
18752 3' -54.2 NC_004683.1 + 42004 0.66 0.747478
Target:  5'- gGUggGACGcAGCUcguUGUGCAGCcgauGCCg- -3'
miRNA:   3'- gCGaaCUGC-UCGA---ACACGUCG----UGGag -5'
18752 3' -54.2 NC_004683.1 + 38872 0.66 0.747478
Target:  5'- gCGCUUaacgauggucagGACGGuCUcGcGCGGCACCUCg -3'
miRNA:   3'- -GCGAA------------CUGCUcGAaCaCGUCGUGGAG- -5'
18752 3' -54.2 NC_004683.1 + 43741 0.66 0.726048
Target:  5'- aGCUgcgGcACGAGCaccUGCAGCACUUg -3'
miRNA:   3'- gCGAa--C-UGCUCGaacACGUCGUGGAg -5'
18752 3' -54.2 NC_004683.1 + 7291 0.66 0.715181
Target:  5'- cCGgUUGGCGAGUcgugGUGC-GUGCCUUg -3'
miRNA:   3'- -GCgAACUGCUCGaa--CACGuCGUGGAG- -5'
18752 3' -54.2 NC_004683.1 + 34905 0.68 0.648604
Target:  5'- uGCggcACGGGCUUGUuuGCGGCGCUg- -3'
miRNA:   3'- gCGaacUGCUCGAACA--CGUCGUGGag -5'
18752 3' -54.2 NC_004683.1 + 13654 0.68 0.603749
Target:  5'- gCGgUUGGCGAGCUugaugccgaucUGUGCGgccugagauGCACCg- -3'
miRNA:   3'- -GCgAACUGCUCGA-----------ACACGU---------CGUGGag -5'
18752 3' -54.2 NC_004683.1 + 24248 0.68 0.603749
Target:  5'- gCGCggucaUGACGcGGcCUUGUGCAGgucggcgauCGCCUCg -3'
miRNA:   3'- -GCGa----ACUGC-UC-GAACACGUC---------GUGGAG- -5'
18752 3' -54.2 NC_004683.1 + 26271 0.69 0.581433
Target:  5'- gGCg-GGCGAGCgcguugGUGUGGCGCCg- -3'
miRNA:   3'- gCGaaCUGCUCGaa----CACGUCGUGGag -5'
18752 3' -54.2 NC_004683.1 + 2366 0.69 0.559292
Target:  5'- uGCUcauGCGGG---GUGCAGCGCCUCg -3'
miRNA:   3'- gCGAac-UGCUCgaaCACGUCGUGGAG- -5'
18752 3' -54.2 NC_004683.1 + 37832 0.71 0.453351
Target:  5'- gGC-UGAUGGGCUUGUgacGCGGcCGCCUg -3'
miRNA:   3'- gCGaACUGCUCGAACA---CGUC-GUGGAg -5'
18752 3' -54.2 NC_004683.1 + 56809 0.74 0.317634
Target:  5'- gGCUcGuCGGGCUUGaUGC-GCGCCUCg -3'
miRNA:   3'- gCGAaCuGCUCGAAC-ACGuCGUGGAG- -5'
18752 3' -54.2 NC_004683.1 + 1205 1.11 0.000856
Target:  5'- gCGCUUGACGAGCUUGUGCAGCACCUCg -3'
miRNA:   3'- -GCGAACUGCUCGAACACGUCGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.