Results 61 - 63 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18752 | 5' | -55.7 | NC_004683.1 | + | 2485 | 0.66 | 0.671852 |
Target: 5'- -aGGCGccaauuccGUCGACGGGCCGGcCAGUg -3' miRNA: 3'- caCCGUa-------CGGCUGCUCGGUUaGUCGu -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 2145 | 0.7 | 0.445931 |
Target: 5'- cGUGGcCGUGCUGGCGGGCCugg-GGUg -3' miRNA: 3'- -CACC-GUACGGCUGCUCGGuuagUCGu -5' |
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18752 | 5' | -55.7 | NC_004683.1 | + | 1170 | 0.96 | 0.006307 |
Target: 5'- cGUGGCAU-CCGACGAGCCAAUCAGCAa -3' miRNA: 3'- -CACCGUAcGGCUGCUCGGUUAGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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