miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18755 5' -55.2 NC_004683.1 + 20391 0.66 0.74629
Target:  5'- aCAUGAACgCGCUgCCGcCGUCGccGCc -3'
miRNA:   3'- aGUGCUUG-GCGAgGGCaGCAGUa-CGu -5'
18755 5' -55.2 NC_004683.1 + 41161 0.66 0.74629
Target:  5'- gCGCgGGGCCGCUUacuaCGUgGUgAUGCGa -3'
miRNA:   3'- aGUG-CUUGGCGAGg---GCAgCAgUACGU- -5'
18755 5' -55.2 NC_004683.1 + 10189 0.66 0.714771
Target:  5'- gCGCGGuagGCCGCgaCC-UCGUUAUGCAg -3'
miRNA:   3'- aGUGCU---UGGCGagGGcAGCAGUACGU- -5'
18755 5' -55.2 NC_004683.1 + 44355 0.66 0.714771
Target:  5'- gCGCGGaucGCCGCgucgagCCgCGUCGUCuucgGUGCc -3'
miRNA:   3'- aGUGCU---UGGCGa-----GG-GCAGCAG----UACGu -5'
18755 5' -55.2 NC_004683.1 + 40302 0.67 0.704089
Target:  5'- gCGCGGGCCuGCUCggCGUCGUag-GCAg -3'
miRNA:   3'- aGUGCUUGG-CGAGg-GCAGCAguaCGU- -5'
18755 5' -55.2 NC_004683.1 + 40425 0.67 0.686857
Target:  5'- cCAcCGAGCCGCagugugggcacccgCCCGUgG-CAUGCAc -3'
miRNA:   3'- aGU-GCUUGGCGa-------------GGGCAgCaGUACGU- -5'
18755 5' -55.2 NC_004683.1 + 27677 0.67 0.682527
Target:  5'- uUCGgGGACCGCUucacgauguaCCCGgacaCGUCGgcggGCAa -3'
miRNA:   3'- -AGUgCUUGGCGA----------GGGCa---GCAGUa---CGU- -5'
18755 5' -55.2 NC_004683.1 + 42749 0.67 0.671669
Target:  5'- gCGCGAagcuGCUGUUgCCGcCGUCGUGUc -3'
miRNA:   3'- aGUGCU----UGGCGAgGGCaGCAGUACGu -5'
18755 5' -55.2 NC_004683.1 + 6217 0.68 0.627973
Target:  5'- aCGCGAaccaGCCGCgcgaCCCGUUGggCcgGCGg -3'
miRNA:   3'- aGUGCU----UGGCGa---GGGCAGCa-GuaCGU- -5'
18755 5' -55.2 NC_004683.1 + 46610 0.68 0.617034
Target:  5'- cCGCGAcggcaaggccGCCGCgCCCGUCGaUCA-GCc -3'
miRNA:   3'- aGUGCU----------UGGCGaGGGCAGC-AGUaCGu -5'
18755 5' -55.2 NC_004683.1 + 45612 0.68 0.606108
Target:  5'- gUCGCGGcgccGCUGCUgCCGUgGUUgguaGUGCAg -3'
miRNA:   3'- -AGUGCU----UGGCGAgGGCAgCAG----UACGU- -5'
18755 5' -55.2 NC_004683.1 + 48303 0.69 0.58433
Target:  5'- gCGCGAuUUGUUCCCGcCG-CGUGCAu -3'
miRNA:   3'- aGUGCUuGGCGAGGGCaGCaGUACGU- -5'
18755 5' -55.2 NC_004683.1 + 46107 0.69 0.56271
Target:  5'- gCGCgGGACCGCUCggCCGccgCGUCggGCAg -3'
miRNA:   3'- aGUG-CUUGGCGAG--GGCa--GCAGuaCGU- -5'
18755 5' -55.2 NC_004683.1 + 51111 0.69 0.551979
Target:  5'- aUCGCGGcgAUCG-UCUCGUCGUCggGCAu -3'
miRNA:   3'- -AGUGCU--UGGCgAGGGCAGCAGuaCGU- -5'
18755 5' -55.2 NC_004683.1 + 48700 0.71 0.468935
Target:  5'- gUCGCGGAguCCGCgggCCCaGUCGggGUGCAu -3'
miRNA:   3'- -AGUGCUU--GGCGa--GGG-CAGCagUACGU- -5'
18755 5' -55.2 NC_004683.1 + 25749 0.71 0.458993
Target:  5'- uUCAuCGGGCCGCUgCCGUCGagCAcGCu -3'
miRNA:   3'- -AGU-GCUUGGCGAgGGCAGCa-GUaCGu -5'
18755 5' -55.2 NC_004683.1 + 49356 0.71 0.449163
Target:  5'- cCACGuguGCCGCga-CGUCGUCggGCAg -3'
miRNA:   3'- aGUGCu--UGGCGaggGCAGCAGuaCGU- -5'
18755 5' -55.2 NC_004683.1 + 37496 0.72 0.375015
Target:  5'- gUACGGGCCGCagCCCG-CGUCAucucaucugaUGCAu -3'
miRNA:   3'- aGUGCUUGGCGa-GGGCaGCAGU----------ACGU- -5'
18755 5' -55.2 NC_004683.1 + 36888 0.73 0.341175
Target:  5'- cUACGAGCCggugacgcagauGCUCCCacUCGUCGUGCu -3'
miRNA:   3'- aGUGCUUGG------------CGAGGGc-AGCAGUACGu -5'
18755 5' -55.2 NC_004683.1 + 47015 0.77 0.194975
Target:  5'- gCGCGuGCCGCUCCac-CGUCGUGCAc -3'
miRNA:   3'- aGUGCuUGGCGAGGgcaGCAGUACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.