miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 3' -56.5 NC_004683.1 + 8390 0.72 0.360566
Target:  5'- cCCCGcgCGGGCCGCgAUCCagcccaccaguaaauGC-CGGAUg -3'
miRNA:   3'- -GGGUuaGCCCGGCG-UAGG---------------CGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49582 0.72 0.324871
Target:  5'- aCCAGUagcaGuGGCCGCAUCCucgucggcCACGAACu -3'
miRNA:   3'- gGGUUAg---C-CCGGCGUAGGc-------GUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 28174 0.73 0.302078
Target:  5'- aCCA---GGGCCGCGUCCGCAaauacucagagGAGCa -3'
miRNA:   3'- gGGUuagCCCGGCGUAGGCGUg----------CUUG- -5'
18757 3' -56.5 NC_004683.1 + 17323 0.66 0.645734
Target:  5'- cCCCGuaCGGcCCGUAUgCGUugGGGCg -3'
miRNA:   3'- -GGGUuaGCCcGGCGUAgGCGugCUUG- -5'
18757 3' -56.5 NC_004683.1 + 14581 0.75 0.217529
Target:  5'- gCCGA-CGGGUCGCAggcCCGCugGAAa -3'
miRNA:   3'- gGGUUaGCCCGGCGUa--GGCGugCUUg -5'
18757 3' -56.5 NC_004683.1 + 42590 0.66 0.645734
Target:  5'- -gCGGUCgGGGCCGguCGUCCGgCugGggUg -3'
miRNA:   3'- ggGUUAG-CCCGGC--GUAGGC-GugCuuG- -5'
18757 3' -56.5 NC_004683.1 + 52612 0.69 0.486912
Target:  5'- aCCCGAguacugCGGGCCGUG-CCaGCACGu-- -3'
miRNA:   3'- -GGGUUa-----GCCCGGCGUaGG-CGUGCuug -5'
18757 3' -56.5 NC_004683.1 + 20233 0.69 0.517567
Target:  5'- gCgCAGUCGGuGCCggGUAUCgGCGCGAucaGCa -3'
miRNA:   3'- -GgGUUAGCC-CGG--CGUAGgCGUGCU---UG- -5'
18757 3' -56.5 NC_004683.1 + 56608 0.68 0.535278
Target:  5'- aCCAccgCGGGCCGCGgguacgacUaccagcacaagaagCUGCGCGAACa -3'
miRNA:   3'- gGGUua-GCCCGGCGU--------A--------------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 40584 0.66 0.68239
Target:  5'- uCUCGAUgGcGGCUGUccuggcacuggcgguGUUCGCAUGAGCa -3'
miRNA:   3'- -GGGUUAgC-CCGGCG---------------UAGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 51177 0.66 0.695221
Target:  5'- aUCCGG-CGcGCCGCcgagaacgcgccCCGCACGAGCg -3'
miRNA:   3'- -GGGUUaGCcCGGCGua----------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 21530 0.66 0.69948
Target:  5'- uCCCGGUCuGGuGCCGCuacaucgacgugAUCCuGCugGGcgGCg -3'
miRNA:   3'- -GGGUUAG-CC-CGGCG------------UAGG-CGugCU--UG- -5'
18757 3' -56.5 NC_004683.1 + 52223 0.67 0.602455
Target:  5'- gUCGGUCGGGuCCGCcUCgGCGaccCGGGCc -3'
miRNA:   3'- gGGUUAGCCC-GGCGuAGgCGU---GCUUG- -5'
18757 3' -56.5 NC_004683.1 + 30747 0.67 0.602455
Target:  5'- gCCC-AUCGacGGCCGCugucgaCCGCACcGGCg -3'
miRNA:   3'- -GGGuUAGC--CCGGCGua----GGCGUGcUUG- -5'
18757 3' -56.5 NC_004683.1 + 9269 0.67 0.591675
Target:  5'- aCCCucgCGGGgCGCAUgcCCGgGCuGGACg -3'
miRNA:   3'- -GGGuuaGCCCgGCGUA--GGCgUG-CUUG- -5'
18757 3' -56.5 NC_004683.1 + 15604 0.67 0.591675
Target:  5'- aCUCGAagaUCGuGGCCGCGggcacgCCGCuGCGGAg -3'
miRNA:   3'- -GGGUU---AGC-CCGGCGUa-----GGCG-UGCUUg -5'
18757 3' -56.5 NC_004683.1 + 12016 0.68 0.570222
Target:  5'- aUCGAcgCGGGCCagcGCGcCCGCGCGGGg -3'
miRNA:   3'- gGGUUa-GCCCGG---CGUaGGCGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 3586 0.67 0.61326
Target:  5'- gCCCGG-CGuGuCCGCGUCgGCGuCGAGCg -3'
miRNA:   3'- -GGGUUaGCcC-GGCGUAGgCGU-GCUUG- -5'
18757 3' -56.5 NC_004683.1 + 18300 0.67 0.624081
Target:  5'- -gCAGUCGGGCCcggagacgggcGCAUCgGCAacCGAugACa -3'
miRNA:   3'- ggGUUAGCCCGG-----------CGUAGgCGU--GCU--UG- -5'
18757 3' -56.5 NC_004683.1 + 4891 0.68 0.558502
Target:  5'- gCCGAaCuGGcCCGCGUCCGaucgacuCACGAGCa -3'
miRNA:   3'- gGGUUaGcCC-GGCGUAGGC-------GUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.