miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 5' -51.7 NC_004683.1 + 21698 0.68 0.808132
Target:  5'- -gGGUgGU-CGGUGCGGGUggcGCUGGCa -3'
miRNA:   3'- ugCUAgCAgGUCAUGCUCAa--UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 12935 0.68 0.807173
Target:  5'- gGCGAU--UCCGGUcuGCGAGUagcggccUGCCGGg -3'
miRNA:   3'- -UGCUAgcAGGUCA--UGCUCA-------AUGGCCg -5'
18757 5' -51.7 NC_004683.1 + 1524 0.69 0.778595
Target:  5'- gGCGAUCGgcguggCCGGguaucGCGAGga--CGGCa -3'
miRNA:   3'- -UGCUAGCa-----GGUCa----UGCUCaaugGCCG- -5'
18757 5' -51.7 NC_004683.1 + 40721 0.69 0.778595
Target:  5'- aAUGAccUCGUUCAGUGCGcGGUUGa-GGCg -3'
miRNA:   3'- -UGCU--AGCAGGUCAUGC-UCAAUggCCG- -5'
18757 5' -51.7 NC_004683.1 + 8580 0.69 0.757071
Target:  5'- gACGGUCGUguagccaCCAGccGCGGGagucgUGCCGGUc -3'
miRNA:   3'- -UGCUAGCA-------GGUCa-UGCUCa----AUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 32627 0.7 0.747665
Target:  5'- cGCGAUCGagaaCCGGUgggcACGGGUgcucaaggcgGCCGGUc -3'
miRNA:   3'- -UGCUAGCa---GGUCA----UGCUCAa---------UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 42600 0.7 0.715656
Target:  5'- cCGGUCGUCCGGcugGGGUggUCGGCg -3'
miRNA:   3'- uGCUAGCAGGUCaugCUCAauGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 55953 0.71 0.682888
Target:  5'- gACGcgCGgCCcGUagACGAGUUgGCCGGCg -3'
miRNA:   3'- -UGCuaGCaGGuCA--UGCUCAA-UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 5067 0.71 0.671852
Target:  5'- cGCGGUCGUagucgccaCGGccgcccUGCGAGgaACCGGCc -3'
miRNA:   3'- -UGCUAGCAg-------GUC------AUGCUCaaUGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 49722 0.71 0.638556
Target:  5'- aGCGAUCGUgCAcgaagGCGAGUUGCCcgaagGGUg -3'
miRNA:   3'- -UGCUAGCAgGUca---UGCUCAAUGG-----CCG- -5'
18757 5' -51.7 NC_004683.1 + 4714 0.72 0.616311
Target:  5'- cCGAUgGcacgcaggCCGGUGCGAGggugcACCGGCa -3'
miRNA:   3'- uGCUAgCa-------GGUCAUGCUCaa---UGGCCG- -5'
18757 5' -51.7 NC_004683.1 + 22164 0.72 0.604096
Target:  5'- cCGAUaCGugguacccgaauaUCCAGUACGGGUUGCgCGGg -3'
miRNA:   3'- uGCUA-GC-------------AGGUCAUGCUCAAUG-GCCg -5'
18757 5' -51.7 NC_004683.1 + 447 0.75 0.464945
Target:  5'- gGCGGUCGaggcggaUCCGGUggACGAGUUGaaGGCc -3'
miRNA:   3'- -UGCUAGC-------AGGUCA--UGCUCAAUggCCG- -5'
18757 5' -51.7 NC_004683.1 + 54691 0.75 0.436099
Target:  5'- gGCGAUCGUCCGGUcgGCGAcGUcgcgccgauUACgGGUg -3'
miRNA:   3'- -UGCUAGCAGGUCA--UGCU-CA---------AUGgCCG- -5'
18757 5' -51.7 NC_004683.1 + 2743 1.11 0.002064
Target:  5'- aACGAUCGUCCAGUACGAGUUACCGGCc -3'
miRNA:   3'- -UGCUAGCAGGUCAUGCUCAAUGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.