Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 18758 | 5' | -54.6 | NC_004683.1 | + | 9698 | 0.66 | 0.76332 |
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Target: 5'- -cGGUGGCCGACCgugagGCGU--ACCu- -3' miRNA: 3'- cuCCAUUGGCUGGaa---CGCGguUGGcu -5' |
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| 18758 | 5' | -54.6 | NC_004683.1 | + | 10113 | 0.66 | 0.742569 |
|
Target: 5'- cGAGGUcg-CGGCCUaccGCGCCAgcaaguacGCCGGc -3' miRNA: 3'- -CUCCAuugGCUGGAa--CGCGGU--------UGGCU- -5' |
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| 18758 | 5' | -54.6 | NC_004683.1 | + | 56881 | 0.66 | 0.753007 |
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Target: 5'- -uGGUGAaggcccCCGACC-UGCGCCGAUg-- -3' miRNA: 3'- cuCCAUU------GGCUGGaACGCGGUUGgcu -5' |
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| 18758 | 5' | -54.6 | NC_004683.1 | + | 40919 | 0.66 | 0.753007 |
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Target: 5'- -cGGau-CCGACCcggGCGCCgAGCUGAc -3' miRNA: 3'- cuCCauuGGCUGGaa-CGCGG-UUGGCU- -5' |
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| 18758 | 5' | -54.6 | NC_004683.1 | + | 44860 | 0.66 | 0.76332 |
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Target: 5'- -uGGUGGcCCGGCCUgGagGCCGaguGCCGAu -3' miRNA: 3'- cuCCAUU-GGCUGGAaCg-CGGU---UGGCU- -5' |
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| 18758 | 5' | -54.6 | NC_004683.1 | + | 51305 | 0.66 | 0.76332 |
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Target: 5'- gGAGGgccGCCGAugaaCCUcaaCGCCAGCCGc -3' miRNA: 3'- -CUCCau-UGGCU----GGAac-GCGGUUGGCu -5' |
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| 18758 | 5' | -54.6 | NC_004683.1 | + | 18160 | 0.66 | 0.753007 |
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Target: 5'- uAGGUGGCCGug---GUGCCcGCCGGg -3' miRNA: 3'- cUCCAUUGGCuggaaCGCGGuUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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