miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18758 5' -54.6 NC_004683.1 + 27060 0.77 0.217133
Target:  5'- cGAGGUGGCCGGCCUgcccgGCGCUcACgCGu -3'
miRNA:   3'- -CUCCAUUGGCUGGAa----CGCGGuUG-GCu -5'
18758 5' -54.6 NC_004683.1 + 25475 0.7 0.535479
Target:  5'- -uGGUGGCC-ACCgcgGCGCUGGCCGu -3'
miRNA:   3'- cuCCAUUGGcUGGaa-CGCGGUUGGCu -5'
18758 5' -54.6 NC_004683.1 + 25429 0.79 0.152648
Target:  5'- cGucGUAGCCGACCUgaaugccggUGCGCCcACCGAa -3'
miRNA:   3'- -CucCAUUGGCUGGA---------ACGCGGuUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 24653 0.75 0.26073
Target:  5'- cGAGGUAGCCG-CCgaugggGUaGCCGACCGGc -3'
miRNA:   3'- -CUCCAUUGGCuGGaa----CG-CGGUUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 24509 0.69 0.546217
Target:  5'- -cGGUGGCCGGCggCUUGguccCGCCGuaGCCGAc -3'
miRNA:   3'- cuCCAUUGGCUG--GAAC----GCGGU--UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 24011 0.72 0.386493
Target:  5'- aGGGUGACCGGCCcgacgaUGcCGUCGGCCGc -3'
miRNA:   3'- cUCCAUUGGCUGGa-----AC-GCGGUUGGCu -5'
18758 5' -54.6 NC_004683.1 + 18160 0.66 0.753007
Target:  5'- uAGGUGGCCGug---GUGCCcGCCGGg -3'
miRNA:   3'- cUCCAUUGGCuggaaCGCGGuUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 17207 0.69 0.60077
Target:  5'- cGAGGUcaugguGCCGACCccgGCGCCc-CCGu -3'
miRNA:   3'- -CUCCAu-----UGGCUGGaa-CGCGGuuGGCu -5'
18758 5' -54.6 NC_004683.1 + 15154 0.68 0.644944
Target:  5'- uGGGGUGGCCuGggugaggacGCCUUGCcgGCCugcauGCCGAa -3'
miRNA:   3'- -CUCCAUUGG-C---------UGGAACG--CGGu----UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 14398 0.66 0.732018
Target:  5'- cAGG-AGCUGACCUUgguccugcGCGCCGACaaCGGg -3'
miRNA:   3'- cUCCaUUGGCUGGAA--------CGCGGUUG--GCU- -5'
18758 5' -54.6 NC_004683.1 + 14119 0.67 0.721367
Target:  5'- cGGG-AAUCG-CCUUGcCGCCGaggACCGAg -3'
miRNA:   3'- cUCCaUUGGCuGGAAC-GCGGU---UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 12848 0.67 0.699808
Target:  5'- cGGGUAGCCGuagcCCUgcUGCGCguACUGc -3'
miRNA:   3'- cUCCAUUGGCu---GGA--ACGCGguUGGCu -5'
18758 5' -54.6 NC_004683.1 + 10914 0.74 0.326922
Target:  5'- aGGGUGgccacACCGGCCa-GCGCCAAuCCGAu -3'
miRNA:   3'- cUCCAU-----UGGCUGGaaCGCGGUU-GGCU- -5'
18758 5' -54.6 NC_004683.1 + 10867 0.69 0.567889
Target:  5'- uGGGUGGCCGAUUgcuCGCCAacggcauuGCCGAu -3'
miRNA:   3'- cUCCAUUGGCUGGaacGCGGU--------UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 10113 0.66 0.742569
Target:  5'- cGAGGUcg-CGGCCUaccGCGCCAgcaaguacGCCGGc -3'
miRNA:   3'- -CUCCAuugGCUGGAa--CGCGGU--------UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 9708 0.68 0.644944
Target:  5'- uGAGGguuCCGcCCUUGCGCaguGGCCa- -3'
miRNA:   3'- -CUCCauuGGCuGGAACGCGg--UUGGcu -5'
18758 5' -54.6 NC_004683.1 + 9698 0.66 0.76332
Target:  5'- -cGGUGGCCGACCgugagGCGU--ACCu- -3'
miRNA:   3'- cuCCAUUGGCUGGaa---CGCGguUGGcu -5'
18758 5' -54.6 NC_004683.1 + 9082 0.74 0.303558
Target:  5'- gGAGGaacuGCCGACCgaucuucucgGCGUCGACCGGc -3'
miRNA:   3'- -CUCCau--UGGCUGGaa--------CGCGGUUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 8380 0.73 0.343225
Target:  5'- -cGGUGAUCGGCCccGCGCgGGCCGc -3'
miRNA:   3'- cuCCAUUGGCUGGaaCGCGgUUGGCu -5'
18758 5' -54.6 NC_004683.1 + 8079 0.69 0.589771
Target:  5'- uGAGGUGACCcGCaucgacgGCGCCGAcgaccCCGAg -3'
miRNA:   3'- -CUCCAUUGGcUGgaa----CGCGGUU-----GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.