miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1876 5' -56.5 NC_001347.2 + 113162 0.66 0.954268
Target:  5'- aCGuCGUCGCGCacCUGGC-CCGAcaGACg -3'
miRNA:   3'- -GCuGUAGCGCGc-GAUCGcGGCUa-CUG- -5'
1876 5' -56.5 NC_001347.2 + 974 0.66 0.954268
Target:  5'- cCGACAa---GCGC-AGCGCCGAaacGACa -3'
miRNA:   3'- -GCUGUagcgCGCGaUCGCGGCUa--CUG- -5'
1876 5' -56.5 NC_001347.2 + 32610 0.66 0.954268
Target:  5'- aGACGUggaGCGCGCU-GCGCag--GGCa -3'
miRNA:   3'- gCUGUAg--CGCGCGAuCGCGgcuaCUG- -5'
1876 5' -56.5 NC_001347.2 + 79683 0.66 0.951947
Target:  5'- gCGGCGUCG-GCGUUuccaacgacaaucacGGCGCCGgcGGu -3'
miRNA:   3'- -GCUGUAGCgCGCGA---------------UCGCGGCuaCUg -5'
1876 5' -56.5 NC_001347.2 + 165143 0.66 0.950355
Target:  5'- gGACAcagCGcCGCGCUGGaUGaCGGUGAUg -3'
miRNA:   3'- gCUGUa--GC-GCGCGAUC-GCgGCUACUG- -5'
1876 5' -56.5 NC_001347.2 + 48156 0.66 0.946225
Target:  5'- uCGACGUCGCuGCcguaGCUAGUGCUc--GGCa -3'
miRNA:   3'- -GCUGUAGCG-CG----CGAUCGCGGcuaCUG- -5'
1876 5' -56.5 NC_001347.2 + 67084 0.66 0.946225
Target:  5'- uGAcCAUCuGCGCGUacgUGGCGuuGgcGGCa -3'
miRNA:   3'- gCU-GUAG-CGCGCG---AUCGCggCuaCUG- -5'
1876 5' -56.5 NC_001347.2 + 153242 0.66 0.946225
Target:  5'- gGGCA-CGCGCGUgc-CGCCGGccucgGACg -3'
miRNA:   3'- gCUGUaGCGCGCGaucGCGGCUa----CUG- -5'
1876 5' -56.5 NC_001347.2 + 154434 0.66 0.941875
Target:  5'- aCGACGUCGgccgcgggGCGC-AGCGCCuccuuGGUGAUc -3'
miRNA:   3'- -GCUGUAGCg-------CGCGaUCGCGG-----CUACUG- -5'
1876 5' -56.5 NC_001347.2 + 72119 0.66 0.941875
Target:  5'- gCGcCAUcuggaCGCGCGCU--CGCUGGUGGCc -3'
miRNA:   3'- -GCuGUA-----GCGCGCGAucGCGGCUACUG- -5'
1876 5' -56.5 NC_001347.2 + 92827 0.66 0.941875
Target:  5'- -uACcgCGCGCGUgcguGCGCgCGcGUGACg -3'
miRNA:   3'- gcUGuaGCGCGCGau--CGCG-GC-UACUG- -5'
1876 5' -56.5 NC_001347.2 + 129412 0.66 0.937304
Target:  5'- aGGCggCGCgGCGC-AGCGCCGGc--- -3'
miRNA:   3'- gCUGuaGCG-CGCGaUCGCGGCUacug -5'
1876 5' -56.5 NC_001347.2 + 58545 0.66 0.932508
Target:  5'- gGGCAaCGCGCGCUuggacGCGCUaAUGuCg -3'
miRNA:   3'- gCUGUaGCGCGCGAu----CGCGGcUACuG- -5'
1876 5' -56.5 NC_001347.2 + 66654 0.66 0.932017
Target:  5'- gCGGCugcccggGUCGCGCaCcAGCGUcuCGAUGACa -3'
miRNA:   3'- -GCUG-------UAGCGCGcGaUCGCG--GCUACUG- -5'
1876 5' -56.5 NC_001347.2 + 191078 0.67 0.927489
Target:  5'- -aACGcCGCGCGCcacacGGCGCCcAUGGCc -3'
miRNA:   3'- gcUGUaGCGCGCGa----UCGCGGcUACUG- -5'
1876 5' -56.5 NC_001347.2 + 137090 0.67 0.922244
Target:  5'- gGGCGcCGaGCGCUcGCGCUGgcGACg -3'
miRNA:   3'- gCUGUaGCgCGCGAuCGCGGCuaCUG- -5'
1876 5' -56.5 NC_001347.2 + 104450 0.67 0.922244
Target:  5'- -uGCAUCGUGC-C-GGCGCgaCGAUGACg -3'
miRNA:   3'- gcUGUAGCGCGcGaUCGCG--GCUACUG- -5'
1876 5' -56.5 NC_001347.2 + 87945 0.67 0.916775
Target:  5'- -uGCGaCGCGUGCUGGaCGCCGAc--- -3'
miRNA:   3'- gcUGUaGCGCGCGAUC-GCGGCUacug -5'
1876 5' -56.5 NC_001347.2 + 125825 0.67 0.916775
Target:  5'- aGGCcgCGUGCGaaCUAauccuuaCGCCGGUGACg -3'
miRNA:   3'- gCUGuaGCGCGC--GAUc------GCGGCUACUG- -5'
1876 5' -56.5 NC_001347.2 + 68633 0.67 0.911082
Target:  5'- gCGGCGUggaCGCGcCGUUGGCGUCGccucuUGAUg -3'
miRNA:   3'- -GCUGUA---GCGC-GCGAUCGCGGCu----ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.