miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18760 5' -51.9 NC_004683.1 + 53510 0.66 0.885181
Target:  5'- aGGuuGUCGUCCGcgucgaacgGGGUCcAAUCACCc-- -3'
miRNA:   3'- -CCu-CGGCAGGU---------UCCAG-UUAGUGGaac -5'
18760 5' -51.9 NC_004683.1 + 5489 0.66 0.869476
Target:  5'- gGGAuCCGUUgGAGGUgaUGAUCACCgUGg -3'
miRNA:   3'- -CCUcGGCAGgUUCCA--GUUAGUGGaAC- -5'
18760 5' -51.9 NC_004683.1 + 12475 0.68 0.79709
Target:  5'- -cGGCUGUCCGAGGcgcagCAGggCACCUg- -3'
miRNA:   3'- ccUCGGCAGGUUCCa----GUUa-GUGGAac -5'
18760 5' -51.9 NC_004683.1 + 2245 0.68 0.787123
Target:  5'- gGGAGCgGUUCGugAGGUUGAUCgACCg-- -3'
miRNA:   3'- -CCUCGgCAGGU--UCCAGUUAG-UGGaac -5'
18760 5' -51.9 NC_004683.1 + 3964 0.68 0.778008
Target:  5'- cGAGCCGaucaugggguggcggCCGuGGUCGAacugCACCUUGg -3'
miRNA:   3'- cCUCGGCa--------------GGUuCCAGUUa---GUGGAAC- -5'
18760 5' -51.9 NC_004683.1 + 43908 0.69 0.75626
Target:  5'- cGAGCgCGgCCGAGGUCAGcagcgCACCg-- -3'
miRNA:   3'- cCUCG-GCaGGUUCCAGUUa----GUGGaac -5'
18760 5' -51.9 NC_004683.1 + 17293 0.7 0.702346
Target:  5'- cGGGGgCG-CCGGGGUCGG-CACCaUGa -3'
miRNA:   3'- -CCUCgGCaGGUUCCAGUUaGUGGaAC- -5'
18760 5' -51.9 NC_004683.1 + 4263 0.7 0.680197
Target:  5'- cGAuGCgGUCCAAGGUgAuUgACCUUGg -3'
miRNA:   3'- cCU-CGgCAGGUUCCAgUuAgUGGAAC- -5'
18760 5' -51.9 NC_004683.1 + 44396 0.73 0.524581
Target:  5'- cGAGCCG-CaCGAGGUCGAUaCGCCa-- -3'
miRNA:   3'- cCUCGGCaG-GUUCCAGUUA-GUGGaac -5'
18760 5' -51.9 NC_004683.1 + 40671 0.78 0.285529
Target:  5'- -cGGCCuggCCGAGGUCGGUCACCUg- -3'
miRNA:   3'- ccUCGGca-GGUUCCAGUUAGUGGAac -5'
18760 5' -51.9 NC_004683.1 + 4355 1.12 0.001512
Target:  5'- uGGAGCCGUCCAAGGUCAAUCACCUUGg -3'
miRNA:   3'- -CCUCGGCAGGUUCCAGUUAGUGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.