miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18761 3' -53.6 NC_004683.1 + 9156 0.66 0.813175
Target:  5'- uGUUGUUCaGUAGGCgagGuCGUAGGCGUCc -3'
miRNA:   3'- uCGACGAG-CAUCUGg--C-GCAUCUGUAG- -5'
18761 3' -53.6 NC_004683.1 + 23893 0.66 0.792724
Target:  5'- cGUUGC-CG-AGuuccagcGCCGCGUAGGCGUg -3'
miRNA:   3'- uCGACGaGCaUC-------UGGCGCAUCUGUAg -5'
18761 3' -53.6 NC_004683.1 + 46588 0.66 0.773559
Target:  5'- cGCUGCUgGUgccggucgaGGGCCGCGacGGCAa- -3'
miRNA:   3'- uCGACGAgCA---------UCUGGCGCauCUGUag -5'
18761 3' -53.6 NC_004683.1 + 39981 0.66 0.772535
Target:  5'- ---aGCUCGUAGACCGuCGUccggccaacccgcAGcGCAUCc -3'
miRNA:   3'- ucgaCGAGCAUCUGGC-GCA-------------UC-UGUAG- -5'
18761 3' -53.6 NC_004683.1 + 24104 0.67 0.719648
Target:  5'- cGCUGCUCGgcaAGgucgacgacggcaGCCGCGgcaAGuACGUCg -3'
miRNA:   3'- uCGACGAGCa--UC-------------UGGCGCa--UC-UGUAG- -5'
18761 3' -53.6 NC_004683.1 + 38678 0.68 0.687848
Target:  5'- uGC-GCUCGcuGGCCGCGUcGACGUg -3'
miRNA:   3'- uCGaCGAGCauCUGGCGCAuCUGUAg -5'
18761 3' -53.6 NC_004683.1 + 18179 0.68 0.665628
Target:  5'- cGGUcaccgGCUCGUcgccGGACauCGcCGUAGACAUCg -3'
miRNA:   3'- -UCGa----CGAGCA----UCUG--GC-GCAUCUGUAG- -5'
18761 3' -53.6 NC_004683.1 + 52791 0.68 0.654464
Target:  5'- cGCUGCUCGccgAGGCCGaCG-AGuacucguucaGCAUCa -3'
miRNA:   3'- uCGACGAGCa--UCUGGC-GCaUC----------UGUAG- -5'
18761 3' -53.6 NC_004683.1 + 10724 0.69 0.620887
Target:  5'- cAGcCUGUUCGUAu-UCGCGgUAGGCGUCg -3'
miRNA:   3'- -UC-GACGAGCAUcuGGCGC-AUCUGUAG- -5'
18761 3' -53.6 NC_004683.1 + 39781 0.69 0.620887
Target:  5'- uGGCUGC-CGUAGACCuuGUugguGACAg- -3'
miRNA:   3'- -UCGACGaGCAUCUGGcgCAu---CUGUag -5'
18761 3' -53.6 NC_004683.1 + 8154 0.69 0.598536
Target:  5'- cGC-GCUCGgcgccgAGGCCGCGaAGGCcgCg -3'
miRNA:   3'- uCGaCGAGCa-----UCUGGCGCaUCUGuaG- -5'
18761 3' -53.6 NC_004683.1 + 24131 0.69 0.598536
Target:  5'- cAGCUGCUCccAGACUGCuUGaGCAUCu -3'
miRNA:   3'- -UCGACGAGcaUCUGGCGcAUcUGUAG- -5'
18761 3' -53.6 NC_004683.1 + 41997 0.7 0.569667
Target:  5'- cGCaGCUCGUugugcagccgaugccGGAUgGCGUAGACGcUCg -3'
miRNA:   3'- uCGaCGAGCA---------------UCUGgCGCAUCUGU-AG- -5'
18761 3' -53.6 NC_004683.1 + 24918 0.7 0.569666
Target:  5'- uGGCUGCUgcggcugaucaccaaCGUGacGACCGCGgcGACuUCu -3'
miRNA:   3'- -UCGACGA---------------GCAU--CUGGCGCauCUGuAG- -5'
18761 3' -53.6 NC_004683.1 + 47084 0.7 0.565253
Target:  5'- cGCgccgGCUCGgu-ACCgGUGUGGACAUCu -3'
miRNA:   3'- uCGa---CGAGCaucUGG-CGCAUCUGUAG- -5'
18761 3' -53.6 NC_004683.1 + 6968 0.72 0.469207
Target:  5'- uGCaGCUCGUcGGCCGgCGgcccAGACGUCg -3'
miRNA:   3'- uCGaCGAGCAuCUGGC-GCa---UCUGUAG- -5'
18761 3' -53.6 NC_004683.1 + 26290 0.72 0.469207
Target:  5'- aAGCUGCUCGacgAGACuCGCaccgAGGCAUa -3'
miRNA:   3'- -UCGACGAGCa--UCUG-GCGca--UCUGUAg -5'
18761 3' -53.6 NC_004683.1 + 43497 0.72 0.439041
Target:  5'- gGGCUGCcgCGaccgcAGACCGuCGgcGACGUCg -3'
miRNA:   3'- -UCGACGa-GCa----UCUGGC-GCauCUGUAG- -5'
18761 3' -53.6 NC_004683.1 + 38825 0.76 0.276911
Target:  5'- cGGCcaccaUGUUCGUGG-UCGCGUGGAUAUCg -3'
miRNA:   3'- -UCG-----ACGAGCAUCuGGCGCAUCUGUAG- -5'
18761 3' -53.6 NC_004683.1 + 5893 1.09 0.001394
Target:  5'- gAGCUGCUCGUAGACCGCGUAGACAUCc -3'
miRNA:   3'- -UCGACGAGCAUCUGGCGCAUCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.