miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18762 5' -54.7 NC_004683.1 + 3501 0.66 0.747665
Target:  5'- -aGCCGGAaucGGUgGUGGccgcGGUGAACUCg -3'
miRNA:   3'- caCGGCUUgu-CCA-CGCC----CUACUUGAG- -5'
18762 5' -54.7 NC_004683.1 + 48433 0.66 0.737099
Target:  5'- aGUGUCGAGCAGc-GCGGGGaugcGGACgUCg -3'
miRNA:   3'- -CACGGCUUGUCcaCGCCCUa---CUUG-AG- -5'
18762 5' -54.7 NC_004683.1 + 24172 0.66 0.736036
Target:  5'- uUGCCGAgcagcGCGGGccagcccuuggccUGCGGGccGAACa- -3'
miRNA:   3'- cACGGCU-----UGUCC-------------ACGCCCuaCUUGag -5'
18762 5' -54.7 NC_004683.1 + 51706 0.66 0.726426
Target:  5'- -aGCCGAGCAGGcccUGCaGGAgu-GCUa -3'
miRNA:   3'- caCGGCUUGUCC---ACGcCCUacuUGAg -5'
18762 5' -54.7 NC_004683.1 + 6945 0.66 0.704802
Target:  5'- -gGCCGAcugGCGGcGgGCGGuGGUGcAGCUCg -3'
miRNA:   3'- caCGGCU---UGUC-CaCGCC-CUAC-UUGAG- -5'
18762 5' -54.7 NC_004683.1 + 40244 0.67 0.682888
Target:  5'- -cGCCGAgcuGCAGGcGCGcgucgaugaguuGGAgucgGAACUCg -3'
miRNA:   3'- caCGGCU---UGUCCaCGC------------CCUa---CUUGAG- -5'
18762 5' -54.7 NC_004683.1 + 7168 0.67 0.671852
Target:  5'- -cGCUGAGaCGGGUGCgcccggguGGGgcGGACUUa -3'
miRNA:   3'- caCGGCUU-GUCCACG--------CCCuaCUUGAG- -5'
18762 5' -54.7 NC_004683.1 + 1431 0.68 0.638556
Target:  5'- -gGCCGAACucg-GCGGGAUcGAGCg- -3'
miRNA:   3'- caCGGCUUGuccaCGCCCUA-CUUGag -5'
18762 5' -54.7 NC_004683.1 + 23387 0.69 0.528614
Target:  5'- aUGCCGcGCuGcaGCGGGAUGAcgauGCUCg -3'
miRNA:   3'- cACGGCuUGuCcaCGCCCUACU----UGAG- -5'
18762 5' -54.7 NC_004683.1 + 38598 0.7 0.517934
Target:  5'- -cGCCGGACGGG-GCGGGGgcauuGACa- -3'
miRNA:   3'- caCGGCUUGUCCaCGCCCUac---UUGag -5'
18762 5' -54.7 NC_004683.1 + 25511 0.71 0.416818
Target:  5'- -aGCCGGACuGG-GCGGaAUGAGCUUc -3'
miRNA:   3'- caCGGCUUGuCCaCGCCcUACUUGAG- -5'
18762 5' -54.7 NC_004683.1 + 27842 0.77 0.200964
Target:  5'- aUGCgCGAGCuaGUGCGGGAUGggUUCg -3'
miRNA:   3'- cACG-GCUUGucCACGCCCUACuuGAG- -5'
18762 5' -54.7 NC_004683.1 + 6180 1.1 0.000913
Target:  5'- gGUGCCGAACAGGUGCGGGAUGAACUCg -3'
miRNA:   3'- -CACGGCUUGUCCACGCCCUACUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.