miRNA display CGI


Results 41 - 60 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 41046 0.67 0.227906
Target:  5'- uGCgCGCgGCCAgGUCGGCgugGCCgaCGGg -3'
miRNA:   3'- gCGgGCGgCGGU-CAGCCGg--CGGa-GCC- -5'
18764 3' -66 NC_004683.1 + 40597 0.67 0.244894
Target:  5'- gGCCCGCCGa-GGg-GGgCGCCgugCGGg -3'
miRNA:   3'- gCGGGCGGCggUCagCCgGCGGa--GCC- -5'
18764 3' -66 NC_004683.1 + 52418 0.67 0.227906
Target:  5'- gCGaguaCCGCCgaacGCCGGaaUCGGCCGuCCUUGa -3'
miRNA:   3'- -GCg---GGCGG----CGGUC--AGCCGGC-GGAGCc -5'
18764 3' -66 NC_004683.1 + 20620 0.67 0.222469
Target:  5'- cCGCCguUGCCGCCGGU--GCCGCCggugaucgugcCGGa -3'
miRNA:   3'- -GCGG--GCGGCGGUCAgcCGGCGGa----------GCC- -5'
18764 3' -66 NC_004683.1 + 27539 0.67 0.244894
Target:  5'- aGCgCGCuCGCUg--CGGCUGCCUgCGGu -3'
miRNA:   3'- gCGgGCG-GCGGucaGCCGGCGGA-GCC- -5'
18764 3' -66 NC_004683.1 + 4050 0.67 0.239117
Target:  5'- aCGCgCGCUaCCAcGUgCGcGCCGCcCUCGGg -3'
miRNA:   3'- -GCGgGCGGcGGU-CA-GC-CGGCG-GAGCC- -5'
18764 3' -66 NC_004683.1 + 257 0.67 0.217143
Target:  5'- uGCCCGCgGCgGGgcuGGUCGCgaCGGu -3'
miRNA:   3'- gCGGGCGgCGgUCag-CCGGCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 6740 0.67 0.226264
Target:  5'- gCGCgCCGCgGCCAGcaCGGCgUcgauggcagccugaGCCUCGGu -3'
miRNA:   3'- -GCG-GGCGgCGGUCa-GCCG-G--------------CGGAGCC- -5'
18764 3' -66 NC_004683.1 + 40945 0.67 0.222469
Target:  5'- cCGCgCCGCCguuGCCcGUCGGCCacGCCgaccUGGc -3'
miRNA:   3'- -GCG-GGCGG---CGGuCAGCCGG--CGGa---GCC- -5'
18764 3' -66 NC_004683.1 + 21940 0.67 0.227906
Target:  5'- cCGCCCGgCGgUGGcgggCGGCCGCCgaguucacCGGc -3'
miRNA:   3'- -GCGGGCgGCgGUCa---GCCGGCGGa-------GCC- -5'
18764 3' -66 NC_004683.1 + 33245 0.67 0.239117
Target:  5'- gGCCCGUUucccggcuaGCCAGUCGucGCaCGCUUCGcGg -3'
miRNA:   3'- gCGGGCGG---------CGGUCAGC--CG-GCGGAGC-C- -5'
18764 3' -66 NC_004683.1 + 15683 0.67 0.244894
Target:  5'- uGCCCGCgGCCacgaucuucgAGUCugcguuGCCGCCgUCGa -3'
miRNA:   3'- gCGGGCGgCGG----------UCAGc-----CGGCGG-AGCc -5'
18764 3' -66 NC_004683.1 + 3344 0.66 0.287944
Target:  5'- uGCCCGUaguuugaguagguCGCCg--CGGCCaggcCCUCGGa -3'
miRNA:   3'- gCGGGCG-------------GCGGucaGCCGGc---GGAGCC- -5'
18764 3' -66 NC_004683.1 + 25529 0.66 0.269162
Target:  5'- aCGCCgUGCCGCUguggcucggccuGGUC-GCCGCCcUGGc -3'
miRNA:   3'- -GCGG-GCGGCGG------------UCAGcCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 54978 0.66 0.28861
Target:  5'- aCGCacaCCGCagCGUCAucgagcgcGUCGGCgGCCUCGa -3'
miRNA:   3'- -GCG---GGCG--GCGGU--------CAGCCGgCGGAGCc -5'
18764 3' -66 NC_004683.1 + 41100 0.66 0.269162
Target:  5'- cCGCgCCGCUGCCA--CGGCCgggGCCUUu- -3'
miRNA:   3'- -GCG-GGCGGCGGUcaGCCGG---CGGAGcc -5'
18764 3' -66 NC_004683.1 + 5833 0.66 0.275525
Target:  5'- aGCUCGCCGCgCGGcaccGCCGCCaaGGc -3'
miRNA:   3'- gCGGGCGGCG-GUCagc-CGGCGGagCC- -5'
18764 3' -66 NC_004683.1 + 3851 0.66 0.275525
Target:  5'- cCGCgagUCGCCGCCcaaGGUgcaguucgaccaCGGCCGCCaccccaugaUCGGc -3'
miRNA:   3'- -GCG---GGCGGCGG---UCA------------GCCGGCGG---------AGCC- -5'
18764 3' -66 NC_004683.1 + 13353 0.66 0.28861
Target:  5'- aGCCUGCCcCCAGUCuccGGUgGCggCGGc -3'
miRNA:   3'- gCGGGCGGcGGUCAG---CCGgCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 24643 0.66 0.28861
Target:  5'- gCGCCCagGCCGCCgAGUUcGCgCGCCUg-- -3'
miRNA:   3'- -GCGGG--CGGCGG-UCAGcCG-GCGGAgcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.