miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 25891 0.72 0.099098
Target:  5'- aGUUCGCCgGgCAGacgcUGGCCGCCUCGGu -3'
miRNA:   3'- gCGGGCGG-CgGUCa---GCCGGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 32632 0.73 0.091621
Target:  5'- uCGCCCaGCCGCaguuGGUCGGCaGCCU-GGa -3'
miRNA:   3'- -GCGGG-CGGCGg---UCAGCCGgCGGAgCC- -5'
18764 3' -66 NC_004683.1 + 52215 0.81 0.020947
Target:  5'- aGgCCGUCGUCGGUCGGguCCGCCUCGGc -3'
miRNA:   3'- gCgGGCGGCGGUCAGCC--GGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 6869 0.68 0.18285
Target:  5'- aGCCCuacgGCCGCUGGaCGGCgCGCgaCGGc -3'
miRNA:   3'- gCGGG----CGGCGGUCaGCCG-GCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 10043 0.68 0.19692
Target:  5'- aCG-CCGCCgaGCCGuUCGGCCGCggCGGc -3'
miRNA:   3'- -GCgGGCGG--CGGUcAGCCGGCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 13353 0.66 0.28861
Target:  5'- aGCCUGCCcCCAGUCuccGGUgGCggCGGc -3'
miRNA:   3'- gCGGGCGGcGGUCAG---CCGgCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 54978 0.66 0.28861
Target:  5'- aCGCacaCCGCagCGUCAucgagcgcGUCGGCgGCCUCGa -3'
miRNA:   3'- -GCG---GGCG--GCGGU--------CAGCCGgCGGAGCc -5'
18764 3' -66 NC_004683.1 + 3851 0.66 0.275525
Target:  5'- cCGCgagUCGCCGCCcaaGGUgcaguucgaccaCGGCCGCCaccccaugaUCGGc -3'
miRNA:   3'- -GCG---GGCGGCGG---UCA------------GCCGGCGG---------AGCC- -5'
18764 3' -66 NC_004683.1 + 5833 0.66 0.275525
Target:  5'- aGCUCGCCGCgCGGcaccGCCGCCaaGGc -3'
miRNA:   3'- gCGGGCGGCG-GUCagc-CGGCGGagCC- -5'
18764 3' -66 NC_004683.1 + 41100 0.66 0.269162
Target:  5'- cCGCgCCGCUGCCA--CGGCCgggGCCUUu- -3'
miRNA:   3'- -GCG-GGCGGCGGUcaGCCGG---CGGAGcc -5'
18764 3' -66 NC_004683.1 + 25529 0.66 0.269162
Target:  5'- aCGCCgUGCCGCUguggcucggccuGGUC-GCCGCCcUGGc -3'
miRNA:   3'- -GCGG-GCGGCGG------------UCAGcCGGCGGaGCC- -5'
18764 3' -66 NC_004683.1 + 14240 0.66 0.269162
Target:  5'- aGCaCUGCCGCaAGcUGuGCCGCCUCa- -3'
miRNA:   3'- gCG-GGCGGCGgUCaGC-CGGCGGAGcc -5'
18764 3' -66 NC_004683.1 + 53637 0.66 0.262919
Target:  5'- gGCCCGCCGCgAccUGGCCGCg---- -3'
miRNA:   3'- gCGGGCGGCGgUcaGCCGGCGgagcc -5'
18764 3' -66 NC_004683.1 + 32512 0.66 0.262919
Target:  5'- aGCCggaCGUgGCgCAGacCGGCCGCCUUGa -3'
miRNA:   3'- gCGG---GCGgCG-GUCa-GCCGGCGGAGCc -5'
18764 3' -66 NC_004683.1 + 33245 0.67 0.239117
Target:  5'- gGCCCGUUucccggcuaGCCAGUCGucGCaCGCUUCGcGg -3'
miRNA:   3'- gCGGGCGG---------CGGUCAGC--CG-GCGGAGC-C- -5'
18764 3' -66 NC_004683.1 + 21940 0.67 0.227906
Target:  5'- cCGCCCGgCGgUGGcgggCGGCCGCCgaguucacCGGc -3'
miRNA:   3'- -GCGGGCgGCgGUCa---GCCGGCGGa-------GCC- -5'
18764 3' -66 NC_004683.1 + 40945 0.67 0.222469
Target:  5'- cCGCgCCGCCguuGCCcGUCGGCCacGCCgaccUGGc -3'
miRNA:   3'- -GCG-GGCGG---CGGuCAGCCGG--CGGa---GCC- -5'
18764 3' -66 NC_004683.1 + 257 0.67 0.217143
Target:  5'- uGCCCGCgGCgGGgcuGGUCGCgaCGGu -3'
miRNA:   3'- gCGGGCGgCGgUCag-CCGGCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 19230 0.68 0.206818
Target:  5'- uGgCCGCCGCCGGgucgaacgCGGUgCGCgUCGa -3'
miRNA:   3'- gCgGGCGGCGGUCa-------GCCG-GCGgAGCc -5'
18764 3' -66 NC_004683.1 + 24643 0.66 0.28861
Target:  5'- gCGCCCagGCCGCCgAGUUcGCgCGCCUg-- -3'
miRNA:   3'- -GCGGG--CGGCGG-UCAGcCG-GCGGAgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.