miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 5' -56 NC_004683.1 + 40593 0.66 0.698567
Target:  5'- cGCCGaggGGGgcGCCGUG-CGGgGAa- -3'
miRNA:   3'- uUGGCa--CCCauCGGCACuGCUgCUag -5'
18764 5' -56 NC_004683.1 + 49121 0.66 0.655068
Target:  5'- gGGCgCGUGcaucGGUAGCCGUG-CGAgcgcuuccCGGUCg -3'
miRNA:   3'- -UUG-GCAC----CCAUCGGCACuGCU--------GCUAG- -5'
18764 5' -56 NC_004683.1 + 19137 0.66 0.644114
Target:  5'- -gUCGUGGGUgAGCCGUcACccucaACGAUCg -3'
miRNA:   3'- uuGGCACCCA-UCGGCAcUGc----UGCUAG- -5'
18764 5' -56 NC_004683.1 + 47140 0.67 0.600287
Target:  5'- cGAUCGUcGGGUGGCCGUGcaguaGCGcUGGUg -3'
miRNA:   3'- -UUGGCA-CCCAUCGGCAC-----UGCuGCUAg -5'
18764 5' -56 NC_004683.1 + 24644 0.68 0.567667
Target:  5'- cGCCGaugGGGUAGCCGaccggcugGugGuuGAUCu -3'
miRNA:   3'- uUGGCa--CCCAUCGGCa-------CugCugCUAG- -5'
18764 5' -56 NC_004683.1 + 56946 0.68 0.555811
Target:  5'- aGACCccgggggGUGGGUcggcGUCGUGaccaGCGACGAUCu -3'
miRNA:   3'- -UUGG-------CACCCAu---CGGCAC----UGCUGCUAG- -5'
18764 5' -56 NC_004683.1 + 24049 0.68 0.524932
Target:  5'- cGCCGagGGGcacgUAGCCGUGcuCGACGAg- -3'
miRNA:   3'- uUGGCa-CCC----AUCGGCACu-GCUGCUag -5'
18764 5' -56 NC_004683.1 + 1663 0.69 0.493698
Target:  5'- cGGCCGUGcGGUuggGGCCu---CGACGAUCg -3'
miRNA:   3'- -UUGGCAC-CCA---UCGGcacuGCUGCUAG- -5'
18764 5' -56 NC_004683.1 + 24079 0.69 0.493698
Target:  5'- cGGCCG-GGGcgGGCgGUGGCGugGugAUCg -3'
miRNA:   3'- -UUGGCaCCCa-UCGgCACUGCugC--UAG- -5'
18764 5' -56 NC_004683.1 + 42318 0.7 0.415036
Target:  5'- --gCGUGGGUGuucGCCGUGaucGCGugGGUUg -3'
miRNA:   3'- uugGCACCCAU---CGGCAC---UGCugCUAG- -5'
18764 5' -56 NC_004683.1 + 31305 0.71 0.405751
Target:  5'- cAGCUGcGGGccgUGGCgGUGGCGGCGAUg -3'
miRNA:   3'- -UUGGCaCCC---AUCGgCACUGCUGCUAg -5'
18764 5' -56 NC_004683.1 + 31503 0.71 0.405751
Target:  5'- cGCCGUGGGguugAGCCugucacUGGUGGCGGUCg -3'
miRNA:   3'- uUGGCACCCa---UCGGc-----ACUGCUGCUAG- -5'
18764 5' -56 NC_004683.1 + 8615 0.71 0.360488
Target:  5'- aGGCCgGUGcGGUGGCCGcccugcagucgguUGuCGACGGUCg -3'
miRNA:   3'- -UUGG-CAC-CCAUCGGC-------------ACuGCUGCUAG- -5'
18764 5' -56 NC_004683.1 + 45469 0.73 0.305063
Target:  5'- uGGCgGUcagGGGUGGCCGUGAccaCGGCaGAUCa -3'
miRNA:   3'- -UUGgCA---CCCAUCGGCACU---GCUG-CUAG- -5'
18764 5' -56 NC_004683.1 + 45596 0.73 0.305063
Target:  5'- uGCCGUGguuGGUAGUgcagCGUGGCGACGAg- -3'
miRNA:   3'- uUGGCAC---CCAUCG----GCACUGCUGCUag -5'
18764 5' -56 NC_004683.1 + 18298 0.75 0.207619
Target:  5'- -cCCGUGGGcgaguugAGCCG-GGCGACGAUg -3'
miRNA:   3'- uuGGCACCCa------UCGGCaCUGCUGCUAg -5'
18764 5' -56 NC_004683.1 + 39892 0.77 0.172117
Target:  5'- cGCUGcGGGuUGGCCG-GACGACGGUCu -3'
miRNA:   3'- uUGGCaCCC-AUCGGCaCUGCUGCUAG- -5'
18764 5' -56 NC_004683.1 + 6985 1.08 0.001055
Target:  5'- aAACCGUGGGUAGCCGUGACGACGAUCg -3'
miRNA:   3'- -UUGGCACCCAUCGGCACUGCUGCUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.