miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18766 5' -57 NC_004683.1 + 12738 0.66 0.591731
Target:  5'- cCGCGCUgaucGcCGACAGCGGgcccaGCAGc- -3'
miRNA:   3'- -GCGCGAaa--C-GCUGUCGCCac---CGUCuu -5'
18766 5' -57 NC_004683.1 + 38488 0.66 0.591731
Target:  5'- cCGUGCUcgGCGaACAuGUGGUcGCAGAc -3'
miRNA:   3'- -GCGCGAaaCGC-UGU-CGCCAcCGUCUu -5'
18766 5' -57 NC_004683.1 + 56235 0.66 0.591731
Target:  5'- aGCGCg--GCGugAGCGuGgGaGCGGAAg -3'
miRNA:   3'- gCGCGaaaCGCugUCGC-CaC-CGUCUU- -5'
18766 5' -57 NC_004683.1 + 56161 0.66 0.585149
Target:  5'- gGCGUggUUGCGgugccagcgccagacGCGGCGGUGGUuGGc -3'
miRNA:   3'- gCGCGa-AACGC---------------UGUCGCCACCGuCUu -5'
18766 5' -57 NC_004683.1 + 31301 0.66 0.580769
Target:  5'- uGUGCagcUGCGGgccgUGGCGGUGGCGGc- -3'
miRNA:   3'- gCGCGaa-ACGCU----GUCGCCACCGUCuu -5'
18766 5' -57 NC_004683.1 + 19851 0.67 0.546017
Target:  5'- gGCGCgguucagccaGCGGCAGCaccggaacGGUGGCuGAGa -3'
miRNA:   3'- gCGCGaaa-------CGCUGUCG--------CCACCGuCUU- -5'
18766 5' -57 NC_004683.1 + 426 0.67 0.526759
Target:  5'- gGCGCag-GCGguggcuggcGCGGCGGUcgaGGCGGAu -3'
miRNA:   3'- gCGCGaaaCGC---------UGUCGCCA---CCGUCUu -5'
18766 5' -57 NC_004683.1 + 10792 0.67 0.525696
Target:  5'- cCGCGCUUcUGCGGCucggaucAGCGGgagGGCcaaucGGAu -3'
miRNA:   3'- -GCGCGAA-ACGCUG-------UCGCCa--CCG-----UCUu -5'
18766 5' -57 NC_004683.1 + 34894 0.67 0.51617
Target:  5'- aGCGCcugacgUGCGGCAcgggcuuguuuGCGGcgcUGGCAGGGu -3'
miRNA:   3'- gCGCGaa----ACGCUGU-----------CGCC---ACCGUCUU- -5'
18766 5' -57 NC_004683.1 + 47574 0.67 0.51617
Target:  5'- gGCGUccccUGCGACGGCuGcGUGGCGGc- -3'
miRNA:   3'- gCGCGaa--ACGCUGUCG-C-CACCGUCuu -5'
18766 5' -57 NC_004683.1 + 39503 0.67 0.51617
Target:  5'- cCGCGagg-GCGAauguaAGUGGUGGCGGu- -3'
miRNA:   3'- -GCGCgaaaCGCUg----UCGCCACCGUCuu -5'
18766 5' -57 NC_004683.1 + 12485 0.68 0.454654
Target:  5'- gCGCGCg--GUGGCcagcugcugAGCGGUGGCGu-- -3'
miRNA:   3'- -GCGCGaaaCGCUG---------UCGCCACCGUcuu -5'
18766 5' -57 NC_004683.1 + 26964 0.69 0.388231
Target:  5'- cCGCGCguacGCGugAGCGccgGGCAGGc -3'
miRNA:   3'- -GCGCGaaa-CGCugUCGCca-CCGUCUu -5'
18766 5' -57 NC_004683.1 + 45543 0.69 0.388231
Target:  5'- gCGCGCgagaagUGCuGCGGCGGU-GCGGAc -3'
miRNA:   3'- -GCGCGaa----ACGcUGUCGCCAcCGUCUu -5'
18766 5' -57 NC_004683.1 + 12154 0.76 0.153572
Target:  5'- cCGCGCUcagguggGCGGCAgGgGGUGGCGGGGg -3'
miRNA:   3'- -GCGCGAaa-----CGCUGU-CgCCACCGUCUU- -5'
18766 5' -57 NC_004683.1 + 21562 0.82 0.056629
Target:  5'- -cUGCUggGCGGCGGCGGUGGCGGGc -3'
miRNA:   3'- gcGCGAaaCGCUGUCGCCACCGUCUu -5'
18766 5' -57 NC_004683.1 + 10416 1.06 0.000982
Target:  5'- gCGCGCUUUGCGACAGCGGUGGCAGAAc -3'
miRNA:   3'- -GCGCGAAACGCUGUCGCCACCGUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.