miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18767 3' -53.4 NC_004683.1 + 40402 0.68 0.745049
Target:  5'- cGACGAGCUCGaccUGCCGCGcUCcaccgagccgcagUgugGGCa -3'
miRNA:   3'- -CUGCUUGAGCaa-GCGGCGC-AG-------------Aa--CCG- -5'
18767 3' -53.4 NC_004683.1 + 6690 0.68 0.735596
Target:  5'- cGGCGAACUg----GCCGCGcacCUUGGCg -3'
miRNA:   3'- -CUGCUUGAgcaagCGGCGCa--GAACCG- -5'
18767 3' -53.4 NC_004683.1 + 40533 0.68 0.724992
Target:  5'- cGGCGGgccACUCGaUCGCCcUGUUcUGGCu -3'
miRNA:   3'- -CUGCU---UGAGCaAGCGGcGCAGaACCG- -5'
18767 3' -53.4 NC_004683.1 + 10049 0.68 0.724992
Target:  5'- -cCGAGC-CGUUCgGCCGCGgc--GGCg -3'
miRNA:   3'- cuGCUUGaGCAAG-CGGCGCagaaCCG- -5'
18767 3' -53.4 NC_004683.1 + 11470 0.69 0.681764
Target:  5'- uGGCGAACUCuUUCaG-CGCGUCggcGGCg -3'
miRNA:   3'- -CUGCUUGAGcAAG-CgGCGCAGaa-CCG- -5'
18767 3' -53.4 NC_004683.1 + 2906 0.7 0.615701
Target:  5'- cGACGGACUCGUU-GCCG-GaCU-GGCg -3'
miRNA:   3'- -CUGCUUGAGCAAgCGGCgCaGAaCCG- -5'
18767 3' -53.4 NC_004683.1 + 8068 0.7 0.604683
Target:  5'- cGACGAAaucCUC-UUCGUCggggGCGUCUUGGUc -3'
miRNA:   3'- -CUGCUU---GAGcAAGCGG----CGCAGAACCG- -5'
18767 3' -53.4 NC_004683.1 + 35757 0.72 0.48685
Target:  5'- cGACGAAuUUCGggcggcauagUCGCCGCG-CUUGGa -3'
miRNA:   3'- -CUGCUU-GAGCa---------AGCGGCGCaGAACCg -5'
18767 3' -53.4 NC_004683.1 + 34910 0.73 0.427231
Target:  5'- cACGGGCUUGUUUGCgGCG-CU-GGCa -3'
miRNA:   3'- cUGCUUGAGCAAGCGgCGCaGAaCCG- -5'
18767 3' -53.4 NC_004683.1 + 56042 0.73 0.424363
Target:  5'- cGACGGcacACUCgGUUgcgaggccaaccacCGCCGCGUCU-GGCg -3'
miRNA:   3'- -CUGCU---UGAG-CAA--------------GCGGCGCAGAaCCG- -5'
18767 3' -53.4 NC_004683.1 + 7662 0.74 0.380995
Target:  5'- cGACGGAga-GUaCGCCGCGUCgugGGCg -3'
miRNA:   3'- -CUGCUUgagCAaGCGGCGCAGaa-CCG- -5'
18767 3' -53.4 NC_004683.1 + 41287 0.75 0.363459
Target:  5'- cGGCGucCUCGgcggccUUCGCCGCGUCggcgGGUg -3'
miRNA:   3'- -CUGCuuGAGC------AAGCGGCGCAGaa--CCG- -5'
18767 3' -53.4 NC_004683.1 + 4459 0.75 0.338222
Target:  5'- cGugGGACUCGUcgUCGCUGgCGUCUcgcUGcGCg -3'
miRNA:   3'- -CugCUUGAGCA--AGCGGC-GCAGA---AC-CG- -5'
18767 3' -53.4 NC_004683.1 + 46106 0.76 0.284392
Target:  5'- cGCGGgaccGCUCGgcCGCCGCGUCg-GGCa -3'
miRNA:   3'- cUGCU----UGAGCaaGCGGCGCAGaaCCG- -5'
18767 3' -53.4 NC_004683.1 + 10829 1.11 0.001261
Target:  5'- cGACGAACUCGUUCGCCGCGUCUUGGCc -3'
miRNA:   3'- -CUGCUUGAGCAAGCGGCGCAGAACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.