Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18767 | 5' | -56.6 | NC_004683.1 | + | 21975 | 0.76 | 0.173305 |
Target: 5'- -gGCCAGGCGGguggugcUGGCgCGCGCGGCCa -3' miRNA: 3'- uaUGGUCUGUC-------ACUGgGUGCGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 11800 | 0.67 | 0.551055 |
Target: 5'- -gAUCGGACGGUucCUCACGCAggGCCUu -3' miRNA: 3'- uaUGGUCUGUCAcuGGGUGCGU--CGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 13794 | 0.67 | 0.551055 |
Target: 5'- --cCCAGuCAGccgGGCCaGCaGCAGCCCg -3' miRNA: 3'- uauGGUCuGUCa--CUGGgUG-CGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 41019 | 0.66 | 0.64933 |
Target: 5'- -gACCccaaGGGCAGUGACCUcgGCGCcuaccucGCCg -3' miRNA: 3'- uaUGG----UCUGUCACUGGG--UGCGu------CGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 32697 | 0.66 | 0.638346 |
Target: 5'- --gUCuGGCAGUGgcaGCUCGCGCcggcuGGCCCg -3' miRNA: 3'- uauGGuCUGUCAC---UGGGUGCG-----UCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 52698 | 0.66 | 0.627356 |
Target: 5'- aGUGCCGGguACAGcUGuacGCCaagCGCGguGCCCg -3' miRNA: 3'- -UAUGGUC--UGUC-AC---UGG---GUGCguCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 48986 | 0.66 | 0.627356 |
Target: 5'- aGUACCgcGGGCccgccGcGAUCCACGCcGCCCu -3' miRNA: 3'- -UAUGG--UCUGu----CaCUGGGUGCGuCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 44916 | 0.66 | 0.594449 |
Target: 5'- -gGCCGGACgguucaccAGUGGCCaGCGCcuGCCg -3' miRNA: 3'- uaUGGUCUG--------UCACUGGgUGCGu-CGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 28761 | 0.66 | 0.594449 |
Target: 5'- uGUGCCAacggcuCAGUGAa--GCGCAGUCCa -3' miRNA: 3'- -UAUGGUcu----GUCACUgggUGCGUCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 37696 | 0.66 | 0.61637 |
Target: 5'- gGUGUCAG-CAGUGGCgacaaCCGCGCGcuGCCCc -3' miRNA: 3'- -UAUGGUCuGUCACUG-----GGUGCGU--CGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 56345 | 0.67 | 0.583532 |
Target: 5'- cGUGCUcGACGGgcugcucACCCACGaCAGCaCCa -3' miRNA: 3'- -UAUGGuCUGUCac-----UGGGUGC-GUCG-GG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 17865 | 0.67 | 0.583532 |
Target: 5'- -aACCGGGCGGgccgggGACgC-CGCAGCgCg -3' miRNA: 3'- uaUGGUCUGUCa-----CUGgGuGCGUCGgG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 48333 | 0.67 | 0.577001 |
Target: 5'- -aACCAGA-AGUGGgccgacguccgcaucCCCGCGCuGCUCg -3' miRNA: 3'- uaUGGUCUgUCACU---------------GGGUGCGuCGGG- -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 20038 | 0.67 | 0.572655 |
Target: 5'- -gGCCAGAcCGGUGAUaCgGCGCGGUUg -3' miRNA: 3'- uaUGGUCU-GUCACUG-GgUGCGUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 49581 | 0.67 | 0.572655 |
Target: 5'- -cACCAGuaGCAGUGGCCgCAuccuCGuCGGCCa -3' miRNA: 3'- uaUGGUC--UGUCACUGG-GU----GC-GUCGGg -5' |
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18767 | 5' | -56.6 | NC_004683.1 | + | 13398 | 0.77 | 0.132024 |
Target: 5'- -gGCCAG--GGUGGCCCGCagGCGGCCCc -3' miRNA: 3'- uaUGGUCugUCACUGGGUG--CGUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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