miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18768 5' -54.2 NC_004683.1 + 44922 0.66 0.806246
Target:  5'- ---aCGGUUCAccagUGGccagCGCcuGCCGUCGAa -3'
miRNA:   3'- cuugGCCAAGU----ACCa---GCG--CGGUAGCU- -5'
18768 5' -54.2 NC_004683.1 + 13587 0.66 0.796615
Target:  5'- uGggUCGcGgUCAUGaUCGCGuCCAUCGGc -3'
miRNA:   3'- -CuuGGC-CaAGUACcAGCGC-GGUAGCU- -5'
18768 5' -54.2 NC_004683.1 + 27519 0.66 0.796615
Target:  5'- -cGCCGGUcgacccugUCGUGGUUGCGCgGc--- -3'
miRNA:   3'- cuUGGCCA--------AGUACCAGCGCGgUagcu -5'
18768 5' -54.2 NC_004683.1 + 56922 0.66 0.796615
Target:  5'- cGACCGGUgggccacugaaCAUGG-CGCGCCuucCGGc -3'
miRNA:   3'- cUUGGCCAa----------GUACCaGCGCGGua-GCU- -5'
18768 5' -54.2 NC_004683.1 + 2518 0.66 0.783839
Target:  5'- cGGugCGGUUCcgGUGGcagCGCuugcgcgacgggaaGCCGUCGGa -3'
miRNA:   3'- -CUugGCCAAG--UACCa--GCG--------------CGGUAGCU- -5'
18768 5' -54.2 NC_004683.1 + 3109 0.66 0.776847
Target:  5'- -cACCGcggCcgGGUCG-GCCAUCGGg -3'
miRNA:   3'- cuUGGCcaaGuaCCAGCgCGGUAGCU- -5'
18768 5' -54.2 NC_004683.1 + 23235 0.66 0.756477
Target:  5'- uGGAUCGGUggggUCAgaagucgGGUCG-GUCGUCGAu -3'
miRNA:   3'- -CUUGGCCA----AGUa------CCAGCgCGGUAGCU- -5'
18768 5' -54.2 NC_004683.1 + 29644 0.66 0.756477
Target:  5'- aAGCCGGUaacuugcugcUCGUaGUCGCGCCAc--- -3'
miRNA:   3'- cUUGGCCA----------AGUAcCAGCGCGGUagcu -5'
18768 5' -54.2 NC_004683.1 + 33546 0.67 0.735596
Target:  5'- uAACCGGUUCAcugugaccgGGUCGUagGCCAacgcugccUCGGu -3'
miRNA:   3'- cUUGGCCAAGUa--------CCAGCG--CGGU--------AGCU- -5'
18768 5' -54.2 NC_004683.1 + 56552 0.67 0.735596
Target:  5'- gGGACCugcGGUUgAUgacGGUCGgGCCAUCa- -3'
miRNA:   3'- -CUUGG---CCAAgUA---CCAGCgCGGUAGcu -5'
18768 5' -54.2 NC_004683.1 + 8183 0.67 0.73454
Target:  5'- --gUCGGUgccagccUCggGGUCgucgGCGCCGUCGAg -3'
miRNA:   3'- cuuGGCCA-------AGuaCCAG----CGCGGUAGCU- -5'
18768 5' -54.2 NC_004683.1 + 26248 0.67 0.714296
Target:  5'- -cGCCGGUUCAUGaUCGCGaggauCAgCGAg -3'
miRNA:   3'- cuUGGCCAAGUACcAGCGCg----GUaGCU- -5'
18768 5' -54.2 NC_004683.1 + 31903 0.68 0.697017
Target:  5'- cGGGCCGGUgCAgccagcggggcgagcUGGUCuGCcacuucuuGCCAUCGAa -3'
miRNA:   3'- -CUUGGCCAaGU---------------ACCAG-CG--------CGGUAGCU- -5'
18768 5' -54.2 NC_004683.1 + 30835 0.68 0.69267
Target:  5'- -cGCCGGUgc--GGUCGacagcgGCCGUCGAu -3'
miRNA:   3'- cuUGGCCAaguaCCAGCg-----CGGUAGCU- -5'
18768 5' -54.2 NC_004683.1 + 44727 0.68 0.681764
Target:  5'- -cGCCGGggcgcUCAUGcGUUGgGCcCGUCGAa -3'
miRNA:   3'- cuUGGCCa----AGUAC-CAGCgCG-GUAGCU- -5'
18768 5' -54.2 NC_004683.1 + 38831 0.68 0.659819
Target:  5'- aGAACuCGGccaccaugUUCGUGGUCGCGUggaUAUCGc -3'
miRNA:   3'- -CUUG-GCC--------AAGUACCAGCGCG---GUAGCu -5'
18768 5' -54.2 NC_004683.1 + 6440 0.71 0.518104
Target:  5'- cGAACCGGUcgaggUCaAUGccgagcgucGUCGCGCCAgcgUCGAg -3'
miRNA:   3'- -CUUGGCCA-----AG-UAC---------CAGCGCGGU---AGCU- -5'
18768 5' -54.2 NC_004683.1 + 11033 1.09 0.001299
Target:  5'- cGAACCGGUUCAUGGUCGCGCCAUCGAg -3'
miRNA:   3'- -CUUGGCCAAGUACCAGCGCGGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.