miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18769 3' -53.2 NC_004683.1 + 46327 0.66 0.775373
Target:  5'- gAACACCACGuacauGCGGUcccgUGaCUGCGGc- -3'
miRNA:   3'- -UUGUGGUGCu----CGUUAa---AC-GACGCCca -5'
18769 3' -53.2 NC_004683.1 + 48257 0.66 0.754305
Target:  5'- cGACGCCGCcGGCGAgugGCUGCGc-- -3'
miRNA:   3'- -UUGUGGUGcUCGUUaaaCGACGCcca -5'
18769 3' -53.2 NC_004683.1 + 43637 0.66 0.754305
Target:  5'- aGGCACC-CGAGaCGAUcucgcaagUGCUGCaGGUg -3'
miRNA:   3'- -UUGUGGuGCUC-GUUAa-------ACGACGcCCA- -5'
18769 3' -53.2 NC_004683.1 + 2161 0.67 0.710671
Target:  5'- --gGCCugGGGUggUcccugaUUGCcGCGGGUg -3'
miRNA:   3'- uugUGGugCUCGuuA------AACGaCGCCCA- -5'
18769 3' -53.2 NC_004683.1 + 49153 0.68 0.677033
Target:  5'- uGCugCGCGAGCGAcUggggagagcUGCUcugggGCGGGUa -3'
miRNA:   3'- uUGugGUGCUCGUUaA---------ACGA-----CGCCCA- -5'
18769 3' -53.2 NC_004683.1 + 14317 0.69 0.608838
Target:  5'- cGGCACagcuuGCG-GCAG--UGCUGCGGGUc -3'
miRNA:   3'- -UUGUGg----UGCuCGUUaaACGACGCCCA- -5'
18769 3' -53.2 NC_004683.1 + 47402 0.69 0.586163
Target:  5'- gAACACCACG-GCGAccUGCUcgaccaucGCGGGc -3'
miRNA:   3'- -UUGUGGUGCuCGUUaaACGA--------CGCCCa -5'
18769 3' -53.2 NC_004683.1 + 25347 0.7 0.552483
Target:  5'- cAGCGCgGCcAGCAGUgcgaccaGCUGCGGGa -3'
miRNA:   3'- -UUGUGgUGcUCGUUAaa-----CGACGCCCa -5'
18769 3' -53.2 NC_004683.1 + 26602 0.7 0.530352
Target:  5'- gAACACCGCccgguAGCAcuccaGCUGCGGGUc -3'
miRNA:   3'- -UUGUGGUGc----UCGUuaaa-CGACGCCCA- -5'
18769 3' -53.2 NC_004683.1 + 31289 0.71 0.508552
Target:  5'- uGCACCGgGGGUuGUgcaGCUGCGGGc -3'
miRNA:   3'- uUGUGGUgCUCGuUAaa-CGACGCCCa -5'
18769 3' -53.2 NC_004683.1 + 10475 0.71 0.48714
Target:  5'- gGACGCCuACGAcaaggcgcGCGA--UGCUGCGGGc -3'
miRNA:   3'- -UUGUGG-UGCU--------CGUUaaACGACGCCCa -5'
18769 3' -53.2 NC_004683.1 + 15614 0.72 0.415888
Target:  5'- cGugGCCGCGGGCAcgccGCUGCGGa- -3'
miRNA:   3'- -UugUGGUGCUCGUuaaaCGACGCCca -5'
18769 3' -53.2 NC_004683.1 + 11230 1.05 0.002536
Target:  5'- gAACACCACGAGCAAUUUGCUGCGGGUc -3'
miRNA:   3'- -UUGUGGUGCUCGUUAAACGACGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.