miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18769 5' -58.5 NC_004683.1 + 11195 1.13 0.000287
Target:  5'- aGCACCCCGGAUGUCGCCUGGAUGCGCu -3'
miRNA:   3'- -CGUGGGGCCUACAGCGGACCUACGCG- -5'
18769 5' -58.5 NC_004683.1 + 49313 0.74 0.194989
Target:  5'- gGCGCCCCGGAcgugugGUUGCUggccgaucgGGAUaggGCGCg -3'
miRNA:   3'- -CGUGGGGCCUa-----CAGCGGa--------CCUA---CGCG- -5'
18769 5' -58.5 NC_004683.1 + 20501 0.73 0.215124
Target:  5'- uGCACCgCCGG-UGcCGCCguuggccgccccGGGUGCGCc -3'
miRNA:   3'- -CGUGG-GGCCuACaGCGGa-----------CCUACGCG- -5'
18769 5' -58.5 NC_004683.1 + 19091 0.73 0.23344
Target:  5'- gGCGCgCCUGGAUcuacccCGCUgGGAUGCGCg -3'
miRNA:   3'- -CGUG-GGGCCUAca----GCGGaCCUACGCG- -5'
18769 5' -58.5 NC_004683.1 + 1167 0.71 0.284279
Target:  5'- gGCGCCCCGuaag-CGCCUGGGcuaccuggaguucUGUGCa -3'
miRNA:   3'- -CGUGGGGCcuacaGCGGACCU-------------ACGCG- -5'
18769 5' -58.5 NC_004683.1 + 39701 0.69 0.369866
Target:  5'- cCACCCCGGcgG-CGCCcaccccGGAacggGCGCc -3'
miRNA:   3'- cGUGGGGCCuaCaGCGGa-----CCUa---CGCG- -5'
18769 5' -58.5 NC_004683.1 + 13102 0.69 0.387047
Target:  5'- ---aCCCGGAaGUCGCCgGGGccaccgGCGCc -3'
miRNA:   3'- cgugGGGCCUaCAGCGGaCCUa-----CGCG- -5'
18769 5' -58.5 NC_004683.1 + 21572 0.69 0.395832
Target:  5'- -uGCCCCGGcuguggugaAUGUCGCCgccagcGGG-GCGUg -3'
miRNA:   3'- cgUGGGGCC---------UACAGCGGa-----CCUaCGCG- -5'
18769 5' -58.5 NC_004683.1 + 9340 0.69 0.417433
Target:  5'- uGCGCCCCGcGAgggucuuacgagccGUCGCC-GGccaGCGCg -3'
miRNA:   3'- -CGUGGGGC-CUa-------------CAGCGGaCCua-CGCG- -5'
18769 5' -58.5 NC_004683.1 + 46011 0.68 0.431293
Target:  5'- uGCACUCCGGGc-UCGCCcagagaaUGucGGUGCGCg -3'
miRNA:   3'- -CGUGGGGCCUacAGCGG-------AC--CUACGCG- -5'
18769 5' -58.5 NC_004683.1 + 7380 0.68 0.451141
Target:  5'- aGCA-CCCGGAggcgcUCGaCCUGGAUucggcggccggGCGCg -3'
miRNA:   3'- -CGUgGGGCCUac---AGC-GGACCUA-----------CGCG- -5'
18769 5' -58.5 NC_004683.1 + 46064 0.68 0.451141
Target:  5'- cGUGCCCCGGu--UCGCCgag--GCGCa -3'
miRNA:   3'- -CGUGGGGCCuacAGCGGaccuaCGCG- -5'
18769 5' -58.5 NC_004683.1 + 6704 0.68 0.460767
Target:  5'- -aGCCUCGGuguUGUCGgcgaaCUGGccGCGCa -3'
miRNA:   3'- cgUGGGGCCu--ACAGCg----GACCuaCGCG- -5'
18769 5' -58.5 NC_004683.1 + 7985 0.68 0.464648
Target:  5'- aCGCCCCcgacgaagaGGAUuucGUCGUCUGcuggaugcagccgguGAUGCGCa -3'
miRNA:   3'- cGUGGGG---------CCUA---CAGCGGAC---------------CUACGCG- -5'
18769 5' -58.5 NC_004683.1 + 36929 0.68 0.470501
Target:  5'- uCGCCCCGGcgGUauCCcGGAggucagcuUGCGCu -3'
miRNA:   3'- cGUGGGGCCuaCAgcGGaCCU--------ACGCG- -5'
18769 5' -58.5 NC_004683.1 + 15165 0.67 0.480338
Target:  5'- cGCACCgaugCUGGG-GUgGCCUGGGUGaggaCGCc -3'
miRNA:   3'- -CGUGG----GGCCUaCAgCGGACCUAC----GCG- -5'
18769 5' -58.5 NC_004683.1 + 13147 0.67 0.490275
Target:  5'- cGUGCCaCCGGcagcGUCGCCUGcAUGUGg -3'
miRNA:   3'- -CGUGG-GGCCua--CAGCGGACcUACGCg -5'
18769 5' -58.5 NC_004683.1 + 9215 0.67 0.490275
Target:  5'- aCACCUucauCGGcgGUccCGCCUGGGacGCGCu -3'
miRNA:   3'- cGUGGG----GCCuaCA--GCGGACCUa-CGCG- -5'
18769 5' -58.5 NC_004683.1 + 39612 0.67 0.490275
Target:  5'- gGCGCCCguuccgGGGUGggCGCCgccgGGGUG-GCg -3'
miRNA:   3'- -CGUGGGg-----CCUACa-GCGGa---CCUACgCG- -5'
18769 5' -58.5 NC_004683.1 + 52064 0.67 0.510426
Target:  5'- cGCGCCCUGGcUGaUCGUCgacgcgGGAgGCGa -3'
miRNA:   3'- -CGUGGGGCCuAC-AGCGGa-----CCUaCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.