miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18770 3' -52.8 NC_004683.1 + 43483 0.66 0.846233
Target:  5'- gGCGuagagcCGGAUCGccUGGCGGUUgcGGCg -3'
miRNA:   3'- aCGCu-----GCCUAGUuuGCUGCCGAa-CCG- -5'
18770 3' -52.8 NC_004683.1 + 27912 0.66 0.846233
Target:  5'- cUGCGACGcugCGAAUG-CGGaauCUUGGCc -3'
miRNA:   3'- -ACGCUGCcuaGUUUGCuGCC---GAACCG- -5'
18770 3' -52.8 NC_004683.1 + 3760 0.66 0.840972
Target:  5'- cGUGaACGGGgccugccgcacacucUCcAGCGGCGGCcgGGCc -3'
miRNA:   3'- aCGC-UGCCU---------------AGuUUGCUGCCGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 41373 0.66 0.83742
Target:  5'- cGCGGugaggcCGGGUagcaGAAUGGCGGC--GGCg -3'
miRNA:   3'- aCGCU------GCCUAg---UUUGCUGCCGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 45969 0.66 0.83742
Target:  5'- gGCG-CGGGUCAAucuGCGACaGaucGGCg -3'
miRNA:   3'- aCGCuGCCUAGUU---UGCUGcCgaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 48227 0.66 0.83742
Target:  5'- cGCGGCGGGaacaaaUCGcgccgaaaugAGCGAcgccgcCGGCgagUGGCu -3'
miRNA:   3'- aCGCUGCCU------AGU----------UUGCU------GCCGa--ACCG- -5'
18770 3' -52.8 NC_004683.1 + 10739 0.67 0.832026
Target:  5'- cGCGGCGGGccaAGACG-CGGCgaacgaguucgucGGCg -3'
miRNA:   3'- aCGCUGCCUag-UUUGCuGCCGaa-----------CCG- -5'
18770 3' -52.8 NC_004683.1 + 28385 0.67 0.828387
Target:  5'- cGCauGACGGGUUGGACGcagccGgGGCgcgGGCg -3'
miRNA:   3'- aCG--CUGCCUAGUUUGC-----UgCCGaa-CCG- -5'
18770 3' -52.8 NC_004683.1 + 46533 0.67 0.828387
Target:  5'- -cUGGCGGAgaAGACGAUGGCgcggauccgGGCc -3'
miRNA:   3'- acGCUGCCUagUUUGCUGCCGaa-------CCG- -5'
18770 3' -52.8 NC_004683.1 + 50486 0.67 0.825635
Target:  5'- gGCGcucggaGCGGAUCGcgucgguuucauggGACGcGCGGCU-GGUg -3'
miRNA:   3'- aCGC------UGCCUAGU--------------UUGC-UGCCGAaCCG- -5'
18770 3' -52.8 NC_004683.1 + 51693 0.67 0.819142
Target:  5'- gGgGGCGGGcuugaucgcgUCGAGCu-CGGCcUGGCg -3'
miRNA:   3'- aCgCUGCCU----------AGUUUGcuGCCGaACCG- -5'
18770 3' -52.8 NC_004683.1 + 23399 0.67 0.809698
Target:  5'- cGCGGCGGcaccGACGAgGGC--GGCu -3'
miRNA:   3'- aCGCUGCCuaguUUGCUgCCGaaCCG- -5'
18770 3' -52.8 NC_004683.1 + 10800 0.67 0.809698
Target:  5'- cUGCGGCucGGAUCAGcGgGAgGGCcaaucggaUUGGCg -3'
miRNA:   3'- -ACGCUG--CCUAGUU-UgCUgCCG--------AACCG- -5'
18770 3' -52.8 NC_004683.1 + 31440 0.67 0.809698
Target:  5'- aGCGGaacGUCcGACGACGGUUgUGGCc -3'
miRNA:   3'- aCGCUgccUAGuUUGCUGCCGA-ACCG- -5'
18770 3' -52.8 NC_004683.1 + 30858 0.67 0.809698
Target:  5'- gGCGGCGuGcgCAGcCGACGGUgcgccGGUg -3'
miRNA:   3'- aCGCUGC-CuaGUUuGCUGCCGaa---CCG- -5'
18770 3' -52.8 NC_004683.1 + 19061 0.67 0.806827
Target:  5'- gGUGACGGcAUCAcccacgacgccaccGACGGCGcGCcUGGa -3'
miRNA:   3'- aCGCUGCC-UAGU--------------UUGCUGC-CGaACCg -5'
18770 3' -52.8 NC_004683.1 + 39880 0.67 0.800063
Target:  5'- aGaCGGCGGAU---GCGcuGCGGgUUGGCc -3'
miRNA:   3'- aC-GCUGCCUAguuUGC--UGCCgAACCG- -5'
18770 3' -52.8 NC_004683.1 + 52991 0.67 0.800063
Target:  5'- gGCGcaACGGAU--GACGAgGGCgcgugucaUGGCg -3'
miRNA:   3'- aCGC--UGCCUAguUUGCUgCCGa-------ACCG- -5'
18770 3' -52.8 NC_004683.1 + 13463 0.67 0.800063
Target:  5'- cGCG-CaGGGU--GGCGGCGGCUUccagGGCg -3'
miRNA:   3'- aCGCuG-CCUAguUUGCUGCCGAA----CCG- -5'
18770 3' -52.8 NC_004683.1 + 52648 0.67 0.800063
Target:  5'- cGCGcCGGAucugcucggUCAGAuCGACcauGGCguugUGGCa -3'
miRNA:   3'- aCGCuGCCU---------AGUUU-GCUG---CCGa---ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.