miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18770 5' -60.5 NC_004683.1 + 23363 0.66 0.434504
Target:  5'- aUGCUcGUGcCGGgGACCggGCUGCg- -3'
miRNA:   3'- gACGGaCGCaGCCgCUGGa-CGACGac -5'
18770 5' -60.5 NC_004683.1 + 5905 0.66 0.425167
Target:  5'- gUGCC-GCG-CGGCGAgCUGCUcGUa- -3'
miRNA:   3'- gACGGaCGCaGCCGCUgGACGA-CGac -5'
18770 5' -60.5 NC_004683.1 + 48108 0.67 0.389051
Target:  5'- -cGCCUGgGcCGGCGccACCUcaucgGCUGCa- -3'
miRNA:   3'- gaCGGACgCaGCCGC--UGGA-----CGACGac -5'
18770 5' -60.5 NC_004683.1 + 2208 0.67 0.389051
Target:  5'- -cGCCUGUGcCGcgugccGUGugCUGCUGCa- -3'
miRNA:   3'- gaCGGACGCaGC------CGCugGACGACGac -5'
18770 5' -60.5 NC_004683.1 + 12658 0.67 0.363318
Target:  5'- -gGCCcGCuGUCGGCGAUCaGCgcgGCUa -3'
miRNA:   3'- gaCGGaCG-CAGCCGCUGGaCGa--CGAc -5'
18770 5' -60.5 NC_004683.1 + 54999 0.67 0.36081
Target:  5'- -aGC--GCGUCGGCGGCCUcgaucccgcauucgGCgGCUGg -3'
miRNA:   3'- gaCGgaCGCAGCCGCUGGA--------------CGaCGAC- -5'
18770 5' -60.5 NC_004683.1 + 21511 0.67 0.355006
Target:  5'- gUGUCUGCGcCGGCG-CC-GCUGUc- -3'
miRNA:   3'- gACGGACGCaGCCGCuGGaCGACGac -5'
18770 5' -60.5 NC_004683.1 + 33930 0.68 0.323116
Target:  5'- -gGCCUGCGgugguccCGGCGACCgcGCgaGCUc -3'
miRNA:   3'- gaCGGACGCa------GCCGCUGGa-CGa-CGAc -5'
18770 5' -60.5 NC_004683.1 + 12634 0.68 0.315485
Target:  5'- -aGCCUGgcCG-CGGCG-CC-GCUGCUGg -3'
miRNA:   3'- gaCGGAC--GCaGCCGCuGGaCGACGAC- -5'
18770 5' -60.5 NC_004683.1 + 40315 0.69 0.279377
Target:  5'- -cGCCUGCagcUCGGCGcggGCCUGCUcgGCg- -3'
miRNA:   3'- gaCGGACGc--AGCCGC---UGGACGA--CGac -5'
18770 5' -60.5 NC_004683.1 + 22427 0.69 0.279377
Target:  5'- -gGCCUG-GUCGGCGACg-GCgcguauggGCUGg -3'
miRNA:   3'- gaCGGACgCAGCCGCUGgaCGa-------CGAC- -5'
18770 5' -60.5 NC_004683.1 + 51631 0.69 0.265882
Target:  5'- uCUGCgUGCGcuggCGGCGcGCCUGCcgUGCg- -3'
miRNA:   3'- -GACGgACGCa---GCCGC-UGGACG--ACGac -5'
18770 5' -60.5 NC_004683.1 + 3363 0.7 0.252919
Target:  5'- -gGCCagGCGUCGGCGgGCCUGCccGUa- -3'
miRNA:   3'- gaCGGa-CGCAGCCGC-UGGACGa-CGac -5'
18770 5' -60.5 NC_004683.1 + 9969 0.7 0.228557
Target:  5'- gCUGCCUgaaGCGUCGaGuCGA-CUGCUGCUc -3'
miRNA:   3'- -GACGGA---CGCAGC-C-GCUgGACGACGAc -5'
18770 5' -60.5 NC_004683.1 + 35426 0.72 0.180954
Target:  5'- uUGUCUcaGUCGGCGugCUGCUGgCUGc -3'
miRNA:   3'- gACGGAcgCAGCCGCugGACGAC-GAC- -5'
18770 5' -60.5 NC_004683.1 + 25706 0.72 0.16715
Target:  5'- gUGCauCUGCGUCGGC---CUGCUGCUGc -3'
miRNA:   3'- gACG--GACGCAGCCGcugGACGACGAC- -5'
18770 5' -60.5 NC_004683.1 + 56567 0.72 0.16715
Target:  5'- -gGCCgggcaUGCGUCGG-GACCUGCgGUUGa -3'
miRNA:   3'- gaCGG-----ACGCAGCCgCUGGACGaCGAC- -5'
18770 5' -60.5 NC_004683.1 + 12492 0.77 0.075538
Target:  5'- cCUGCUgGCGcgCGGUGGCCaGCUGCUGa -3'
miRNA:   3'- -GACGGaCGCa-GCCGCUGGaCGACGAC- -5'
18770 5' -60.5 NC_004683.1 + 23062 0.8 0.045415
Target:  5'- -gGCCUGC-UCGGCGGCCUGgUGCUc -3'
miRNA:   3'- gaCGGACGcAGCCGCUGGACgACGAc -5'
18770 5' -60.5 NC_004683.1 + 18564 0.81 0.04052
Target:  5'- -aGCCUGCcgacaccgGGCGACCUGCUGCUGu -3'
miRNA:   3'- gaCGGACGcag-----CCGCUGGACGACGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.