miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18771 3' -58 NC_004683.1 + 6748 0.67 0.53468
Target:  5'- gGCGGccGCGUGCUGucGCUgcCGACGCUc -3'
miRNA:   3'- gCGCCuaUGCGCGGC--UGA--GCUGCGAc -5'
18771 3' -58 NC_004683.1 + 45480 0.68 0.464395
Target:  5'- uCGCGcGcgACGCGCCccgcaccgaccGGCUCGucgccACGCUGc -3'
miRNA:   3'- -GCGC-CuaUGCGCGG-----------CUGAGC-----UGCGAC- -5'
18771 3' -58 NC_004683.1 + 1763 0.68 0.484015
Target:  5'- gCGCGGGcaucaacaACGCaacGCCGGC-CGACGUUGc -3'
miRNA:   3'- -GCGCCUa-------UGCG---CGGCUGaGCUGCGAC- -5'
18771 3' -58 NC_004683.1 + 23679 0.68 0.484015
Target:  5'- aGCGcaaGAUcCGCGCCGACggguucUCGACGUUc -3'
miRNA:   3'- gCGC---CUAuGCGCGGCUG------AGCUGCGAc -5'
18771 3' -58 NC_004683.1 + 36968 0.68 0.484015
Target:  5'- cCGUGGucguccUGCGCgGACUCGGCGUc- -3'
miRNA:   3'- -GCGCCuau---GCGCGgCUGAGCUGCGac -5'
18771 3' -58 NC_004683.1 + 12020 0.68 0.493974
Target:  5'- aCGCGGGccaGCGCGCCcGCgCGGgGCUa -3'
miRNA:   3'- -GCGCCUa--UGCGCGGcUGaGCUgCGAc -5'
18771 3' -58 NC_004683.1 + 12808 0.68 0.493974
Target:  5'- gGCGGAUACcCgGgCGAUgCGGCGCUGc -3'
miRNA:   3'- gCGCCUAUGcG-CgGCUGaGCUGCGAC- -5'
18771 3' -58 NC_004683.1 + 47707 0.68 0.493974
Target:  5'- uGCGGGgugugcugugAC-CGCCGAgUCGAUGUUGu -3'
miRNA:   3'- gCGCCUa---------UGcGCGGCUgAGCUGCGAC- -5'
18771 3' -58 NC_004683.1 + 10491 0.67 0.524383
Target:  5'- gCGCGcGAUgcuGCGgGCCGGCUUcGCGCc- -3'
miRNA:   3'- -GCGC-CUA---UGCgCGGCUGAGcUGCGac -5'
18771 3' -58 NC_004683.1 + 48230 0.68 0.464395
Target:  5'- gGCGGGaacaaauCGCGCCGAaaugagCGACGCc- -3'
miRNA:   3'- gCGCCUau-----GCGCGGCUga----GCUGCGac -5'
18771 3' -58 NC_004683.1 + 19248 0.68 0.464395
Target:  5'- aCGCGG-UGCGCGUCGAgcUGAUGCc- -3'
miRNA:   3'- -GCGCCuAUGCGCGGCUgaGCUGCGac -5'
18771 3' -58 NC_004683.1 + 6674 0.68 0.454742
Target:  5'- cCGCGG---CGCGCCG-CUggUGugGCUGg -3'
miRNA:   3'- -GCGCCuauGCGCGGCuGA--GCugCGAC- -5'
18771 3' -58 NC_004683.1 + 6809 0.74 0.202326
Target:  5'- -uCGGuUACGCGCuCGAUgugUCGACGCUGg -3'
miRNA:   3'- gcGCCuAUGCGCG-GCUG---AGCUGCGAC- -5'
18771 3' -58 NC_004683.1 + 52481 0.73 0.229999
Target:  5'- aCGCaGGGUcucGCGCGCUGGCUCGGCaaGCa- -3'
miRNA:   3'- -GCG-CCUA---UGCGCGGCUGAGCUG--CGac -5'
18771 3' -58 NC_004683.1 + 24338 0.73 0.235904
Target:  5'- cCGCGaGAUGCaaCGCCGACUCGuCGCc- -3'
miRNA:   3'- -GCGC-CUAUGc-GCGGCUGAGCuGCGac -5'
18771 3' -58 NC_004683.1 + 46551 0.72 0.265372
Target:  5'- gCGCGGAUcCGgGCCGGCaUCGAgcgguacuggcugcCGCUGc -3'
miRNA:   3'- -GCGCCUAuGCgCGGCUG-AGCU--------------GCGAC- -5'
18771 3' -58 NC_004683.1 + 26864 0.7 0.399237
Target:  5'- uGCGGAU-CGagGuuGaACUCGAUGCUGa -3'
miRNA:   3'- gCGCCUAuGCg-CggC-UGAGCUGCGAC- -5'
18771 3' -58 NC_004683.1 + 2701 0.69 0.408185
Target:  5'- uGCGGAUGCgGC-CCGAUugggUCGACGUg- -3'
miRNA:   3'- gCGCCUAUG-CGcGGCUG----AGCUGCGac -5'
18771 3' -58 NC_004683.1 + 21164 0.69 0.426453
Target:  5'- cCGCGGAccACgGUGUCGGCaccgaCGACGCUGc -3'
miRNA:   3'- -GCGCCUa-UG-CGCGGCUGa----GCUGCGAC- -5'
18771 3' -58 NC_004683.1 + 9963 0.69 0.435768
Target:  5'- aGCGGGgcUGCcugaaGCGUCGAgUCGACuGCUGc -3'
miRNA:   3'- gCGCCU--AUG-----CGCGGCUgAGCUG-CGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.