miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18771 5' -55.7 NC_004683.1 + 55787 0.66 0.687403
Target:  5'- uGACGGUcgccGCCGACGacgC-CAGCGUUGa- -3'
miRNA:   3'- -CUGUCG----UGGCUGCa--GaGUCGCAGCau -5'
18771 5' -55.7 NC_004683.1 + 1514 0.66 0.687403
Target:  5'- aGACAGCGgCGGCGa-UCGGCGUgGc- -3'
miRNA:   3'- -CUGUCGUgGCUGCagAGUCGCAgCau -5'
18771 5' -55.7 NC_004683.1 + 45749 0.66 0.665546
Target:  5'- cACAGCGCCGAUGUgC-CGGCGgcCGg- -3'
miRNA:   3'- cUGUCGUGGCUGCA-GaGUCGCa-GCau -5'
18771 5' -55.7 NC_004683.1 + 5721 0.66 0.665546
Target:  5'- aGCAGCG-CGACgGUCUCGGUGaCGUu -3'
miRNA:   3'- cUGUCGUgGCUG-CAGAGUCGCaGCAu -5'
18771 5' -55.7 NC_004683.1 + 20541 0.66 0.654566
Target:  5'- cGGCGGCACCGGCGgcaaCGGCGg---- -3'
miRNA:   3'- -CUGUCGUGGCUGCaga-GUCGCagcau -5'
18771 5' -55.7 NC_004683.1 + 36982 0.67 0.62154
Target:  5'- cGCGG-ACuCGGCGUCUCGGCGuaaaUCGUc -3'
miRNA:   3'- cUGUCgUG-GCUGCAGAGUCGC----AGCAu -5'
18771 5' -55.7 NC_004683.1 + 26499 0.67 0.62154
Target:  5'- cGGCGGCACCGGCGggcacCAGCGg---- -3'
miRNA:   3'- -CUGUCGUGGCUGCaga--GUCGCagcau -5'
18771 5' -55.7 NC_004683.1 + 45298 0.67 0.62154
Target:  5'- --aGGCGCUGACGaUCUCGGCGagCGc- -3'
miRNA:   3'- cugUCGUGGCUGC-AGAGUCGCa-GCau -5'
18771 5' -55.7 NC_004683.1 + 21019 0.67 0.599552
Target:  5'- cGACAGCACCGAa----CAGCGUgGUu -3'
miRNA:   3'- -CUGUCGUGGCUgcagaGUCGCAgCAu -5'
18771 5' -55.7 NC_004683.1 + 28719 0.68 0.566801
Target:  5'- --gAGCGCCGccaaGUCUCGGcCGUCGg- -3'
miRNA:   3'- cugUCGUGGCug--CAGAGUC-GCAGCau -5'
18771 5' -55.7 NC_004683.1 + 3479 0.68 0.555979
Target:  5'- cGCAGgaACgGcACGUCgUCGGCGUCGUAc -3'
miRNA:   3'- cUGUCg-UGgC-UGCAG-AGUCGCAGCAU- -5'
18771 5' -55.7 NC_004683.1 + 55534 0.69 0.501883
Target:  5'- cGACGGCACCGACGUCgaaaugcUCAacGCGcCa-- -3'
miRNA:   3'- -CUGUCGUGGCUGCAG-------AGU--CGCaGcau -5'
18771 5' -55.7 NC_004683.1 + 42719 0.69 0.482312
Target:  5'- cGGCGGcCGCCGAucuCGUCgcgGGCGUCGUc -3'
miRNA:   3'- -CUGUC-GUGGCU---GCAGag-UCGCAGCAu -5'
18771 5' -55.7 NC_004683.1 + 25865 0.7 0.472161
Target:  5'- cGACGGCugGCUG-CGgCUCGGCGUCGa- -3'
miRNA:   3'- -CUGUCG--UGGCuGCaGAGUCGCAGCau -5'
18771 5' -55.7 NC_004683.1 + 29316 0.7 0.472161
Target:  5'- --aGGCGCCGGCGcacuUCUCGGCGUUu-- -3'
miRNA:   3'- cugUCGUGGCUGC----AGAGUCGCAGcau -5'
18771 5' -55.7 NC_004683.1 + 13624 0.71 0.395209
Target:  5'- -cCGGCAUCGGCGUCUCGG-GUCu-- -3'
miRNA:   3'- cuGUCGUGGCUGCAGAGUCgCAGcau -5'
18771 5' -55.7 NC_004683.1 + 53658 0.71 0.386172
Target:  5'- cGGCGGUgcgGCCGGCGUCUgccgCGGCGUUGc- -3'
miRNA:   3'- -CUGUCG---UGGCUGCAGA----GUCGCAGCau -5'
18771 5' -55.7 NC_004683.1 + 40305 0.74 0.274534
Target:  5'- -uCGGCGCgGGCcugCUCGGCGUCGUAg -3'
miRNA:   3'- cuGUCGUGgCUGca-GAGUCGCAGCAU- -5'
18771 5' -55.7 NC_004683.1 + 12395 1.07 0.001339
Target:  5'- cGACAGCACCGACGUCUCAGCGUCGUAc -3'
miRNA:   3'- -CUGUCGUGGCUGCAGAGUCGCAGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.