miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18772 3' -65.2 NC_004683.1 + 10198 0.66 0.269595
Target:  5'- cGugAGCGGGCCgAGgAacaGGCcGCCGa -3'
miRNA:   3'- -CugUCGCCCGGgUCgUcg-CCG-CGGCg -5'
18772 3' -65.2 NC_004683.1 + 24166 0.66 0.269595
Target:  5'- aGCAGCGcGGgCCAGCccuuggccuGCGG-GCCGa -3'
miRNA:   3'- cUGUCGC-CCgGGUCGu--------CGCCgCGGCg -5'
18772 3' -65.2 NC_004683.1 + 20425 0.66 0.269595
Target:  5'- aACGGC-GGCaCCGGCGGUGcaggggccaccGCGCCGa -3'
miRNA:   3'- cUGUCGcCCG-GGUCGUCGC-----------CGCGGCg -5'
18772 3' -65.2 NC_004683.1 + 7483 0.66 0.269595
Target:  5'- uGGCAGCGcGCCCGGCcgccgaauccaGGuCGaGCGCCu- -3'
miRNA:   3'- -CUGUCGCcCGGGUCG-----------UC-GC-CGCGGcg -5'
18772 3' -65.2 NC_004683.1 + 13997 0.66 0.267657
Target:  5'- gGAUAGUGGGUCaucguugccccgCAGgGGCguucugggcuucgaGGUGCCGCg -3'
miRNA:   3'- -CUGUCGCCCGG------------GUCgUCG--------------CCGCGGCG- -5'
18772 3' -65.2 NC_004683.1 + 42500 0.66 0.267657
Target:  5'- cGCGGuCGGGauacgugagccagcUCCAGCccaaGGUGGCuGCCGCc -3'
miRNA:   3'- cUGUC-GCCC--------------GGGUCG----UCGCCG-CGGCG- -5'
18772 3' -65.2 NC_004683.1 + 4941 0.66 0.263181
Target:  5'- --gAGCGGcGgCCAGCGGCGcaugcGCGUCGa -3'
miRNA:   3'- cugUCGCC-CgGGUCGUCGC-----CGCGGCg -5'
18772 3' -65.2 NC_004683.1 + 46802 0.66 0.263181
Target:  5'- cGGCGGCGGGUCCaAGCAccgccCGGUugaucauCCGCu -3'
miRNA:   3'- -CUGUCGCCCGGG-UCGUc----GCCGc------GGCG- -5'
18772 3' -65.2 NC_004683.1 + 3242 0.66 0.263181
Target:  5'- gGACuGUccgaGGGCCUGGCcGCGGCGaCCu- -3'
miRNA:   3'- -CUGuCG----CCCGGGUCGuCGCCGC-GGcg -5'
18772 3' -65.2 NC_004683.1 + 28546 0.66 0.263181
Target:  5'- aGCGGCGGuagcguauCCCGGUAGCGGagcaGUCGg -3'
miRNA:   3'- cUGUCGCCc-------GGGUCGUCGCCg---CGGCg -5'
18772 3' -65.2 NC_004683.1 + 24250 0.66 0.263181
Target:  5'- aGCGGUGGGCCCGcGCcuacgccgAGUccuaCGCCGCg -3'
miRNA:   3'- cUGUCGCCCGGGU-CG--------UCGcc--GCGGCG- -5'
18772 3' -65.2 NC_004683.1 + 9221 0.66 0.263181
Target:  5'- gGACGGUuccGGCUugaaggucaguuCGGCGGCGGUGCCucGCu -3'
miRNA:   3'- -CUGUCGc--CCGG------------GUCGUCGCCGCGG--CG- -5'
18772 3' -65.2 NC_004683.1 + 43367 0.66 0.263181
Target:  5'- cGACGaCGaGGCgaUCgaagAGgGGCGGCGCCGCa -3'
miRNA:   3'- -CUGUcGC-CCG--GG----UCgUCGCCGCGGCG- -5'
18772 3' -65.2 NC_004683.1 + 21348 0.66 0.263181
Target:  5'- cGCGGUGGuGCCCcuguucgucaccGGCGacugggcauGCGGCGCUGa -3'
miRNA:   3'- cUGUCGCC-CGGG------------UCGU---------CGCCGCGGCg -5'
18772 3' -65.2 NC_004683.1 + 15946 0.66 0.262546
Target:  5'- -uCAGCGGcCUCAGCGGCcuGGCcgauguuGCCGUg -3'
miRNA:   3'- cuGUCGCCcGGGUCGUCG--CCG-------CGGCG- -5'
18772 3' -65.2 NC_004683.1 + 41032 0.66 0.256891
Target:  5'- -uCGGCGuGGCCgacgGGCAaCGGCGgCGCg -3'
miRNA:   3'- cuGUCGC-CCGGg---UCGUcGCCGCgGCG- -5'
18772 3' -65.2 NC_004683.1 + 21873 0.66 0.256891
Target:  5'- gGugAGUGGGCagacguaCAcCGGUGGCGCUGa -3'
miRNA:   3'- -CugUCGCCCGg------GUcGUCGCCGCGGCg -5'
18772 3' -65.2 NC_004683.1 + 20484 0.66 0.250725
Target:  5'- aGGCggaGGUGGGgCCGGUGGUGGagGCCGg -3'
miRNA:   3'- -CUG---UCGCCCgGGUCGUCGCCg-CGGCg -5'
18772 3' -65.2 NC_004683.1 + 41373 0.66 0.250725
Target:  5'- cGCGGUGaGGCCgGGUAGCagaauGGCgGCgGCg -3'
miRNA:   3'- cUGUCGC-CCGGgUCGUCG-----CCG-CGgCG- -5'
18772 3' -65.2 NC_004683.1 + 5104 0.66 0.250115
Target:  5'- cGGCAGUccucgaugcugucGGGCuCCAGgA-UGGCGUCGCg -3'
miRNA:   3'- -CUGUCG-------------CCCG-GGUCgUcGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.