miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18772 5' -53.3 NC_004683.1 + 32698 0.66 0.851444
Target:  5'- cGGCugGGCGAAgCGUACGAGGcgagCGg -3'
miRNA:   3'- aCCG--CUGCUUaGCGUGCUCCaacaGC- -5'
18772 5' -53.3 NC_004683.1 + 38820 0.66 0.842831
Target:  5'- -cGCGACGAGUUGgACGAcgacGGUUucgagGUCGu -3'
miRNA:   3'- acCGCUGCUUAGCgUGCU----CCAA-----CAGC- -5'
18772 5' -53.3 NC_004683.1 + 20427 0.66 0.842831
Target:  5'- cUGGUGACGAggUGUAUGuGGUgcUGUUc -3'
miRNA:   3'- -ACCGCUGCUuaGCGUGCuCCA--ACAGc -5'
18772 5' -53.3 NC_004683.1 + 2834 0.66 0.8331
Target:  5'- cGGCaACGAGUCcgucggguuucugGC-CGAGGaUGUCGu -3'
miRNA:   3'- aCCGcUGCUUAG-------------CGuGCUCCaACAGC- -5'
18772 5' -53.3 NC_004683.1 + 55736 0.66 0.812879
Target:  5'- gUGGUGAUGAAUUccugcagaugcgugGcCugGuGGUUGUCGc -3'
miRNA:   3'- -ACCGCUGCUUAG--------------C-GugCuCCAACAGC- -5'
18772 5' -53.3 NC_004683.1 + 56031 0.67 0.806246
Target:  5'- gGGCGACGA--UGC-CGAuGGUgGUCa -3'
miRNA:   3'- aCCGCUGCUuaGCGuGCU-CCAaCAGc -5'
18772 5' -53.3 NC_004683.1 + 45798 0.67 0.806246
Target:  5'- cGGCGugGAggUGCGCGucGc-GUCGa -3'
miRNA:   3'- aCCGCugCUuaGCGUGCucCaaCAGC- -5'
18772 5' -53.3 NC_004683.1 + 49276 0.67 0.796615
Target:  5'- gGGCG-CGggUUagccaGCACGAGGUgGUa- -3'
miRNA:   3'- aCCGCuGCuuAG-----CGUGCUCCAaCAgc -5'
18772 5' -53.3 NC_004683.1 + 4936 0.67 0.786812
Target:  5'- aGGCGGCucauGUgGUuuACGAGGcUGUCGa -3'
miRNA:   3'- aCCGCUGcu--UAgCG--UGCUCCaACAGC- -5'
18772 5' -53.3 NC_004683.1 + 17529 0.67 0.786812
Target:  5'- -cGCGGCGuguAUCGcCACGGGGUguucUCGa -3'
miRNA:   3'- acCGCUGCu--UAGC-GUGCUCCAac--AGC- -5'
18772 5' -53.3 NC_004683.1 + 26371 0.67 0.776847
Target:  5'- -cGCGACGAAUCGguCGAucGGcUGaUCGa -3'
miRNA:   3'- acCGCUGCUUAGCguGCU--CCaAC-AGC- -5'
18772 5' -53.3 NC_004683.1 + 39971 0.67 0.776847
Target:  5'- cUGGUGAC---UCGCGuCGAGGUUGa-- -3'
miRNA:   3'- -ACCGCUGcuuAGCGU-GCUCCAACagc -5'
18772 5' -53.3 NC_004683.1 + 46802 0.67 0.776847
Target:  5'- cGGCGGCGggUCcaaGCACcgcccGGUUGaUCa -3'
miRNA:   3'- aCCGCUGCuuAG---CGUGcu---CCAAC-AGc -5'
18772 5' -53.3 NC_004683.1 + 5529 0.68 0.756477
Target:  5'- gUGGCGACGAccuggCGgGCGAaacgacGGaUGUCGu -3'
miRNA:   3'- -ACCGCUGCUua---GCgUGCU------CCaACAGC- -5'
18772 5' -53.3 NC_004683.1 + 5314 0.68 0.724992
Target:  5'- cGGCGACGAcGUCGCcaggcacugACGGGccaggGUCGa -3'
miRNA:   3'- aCCGCUGCU-UAGCG---------UGCUCcaa--CAGC- -5'
18772 5' -53.3 NC_004683.1 + 31275 0.68 0.724992
Target:  5'- uUGGgGugGAauGUUGCACcgGGGGUUGUg- -3'
miRNA:   3'- -ACCgCugCU--UAGCGUG--CUCCAACAgc -5'
18772 5' -53.3 NC_004683.1 + 44384 0.69 0.704599
Target:  5'- cGGCGAgaucgcCGAGcCGCACGAGGUcgauacgccaccgaaGUCGu -3'
miRNA:   3'- aCCGCU------GCUUaGCGUGCUCCAa--------------CAGC- -5'
18772 5' -53.3 NC_004683.1 + 24422 0.69 0.703518
Target:  5'- cGGCGACGAGUCGgcguugcaucuCGCG-GGUgaacUCGg -3'
miRNA:   3'- aCCGCUGCUUAGC-----------GUGCuCCAac--AGC- -5'
18772 5' -53.3 NC_004683.1 + 24064 0.69 0.679576
Target:  5'- gUGGCGugGuGAUCGCGcCGAGGggcacguagccgUGcUCGa -3'
miRNA:   3'- -ACCGCugC-UUAGCGU-GCUCCa-----------AC-AGC- -5'
18772 5' -53.3 NC_004683.1 + 51836 0.69 0.67081
Target:  5'- uUGGCGGCGAAguacUCG-GCGAGGgcGgcgCGg -3'
miRNA:   3'- -ACCGCUGCUU----AGCgUGCUCCaaCa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.