miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18773 3' -54.4 NC_004683.1 + 4960 0.66 0.805937
Target:  5'- aUGCG-CGUcGAGGCCGGuUCcUCGc -3'
miRNA:   3'- cACGCuGCAuUUCCGGCCcAGuAGCc -5'
18773 3' -54.4 NC_004683.1 + 43087 0.66 0.786661
Target:  5'- --cUGACGgcGAGGCCGaGGUCG-CGc -3'
miRNA:   3'- cacGCUGCauUUCCGGC-CCAGUaGCc -5'
18773 3' -54.4 NC_004683.1 + 46611 0.66 0.776779
Target:  5'- -cGCGACGgcAAGGCCGccgcgccCGUCGa -3'
miRNA:   3'- caCGCUGCauUUCCGGCcca----GUAGCc -5'
18773 3' -54.4 NC_004683.1 + 54465 0.66 0.766749
Target:  5'- ---gGACGUugcGGCCGGGcaugCGUUGGg -3'
miRNA:   3'- cacgCUGCAuuuCCGGCCCa---GUAGCC- -5'
18773 3' -54.4 NC_004683.1 + 4799 0.67 0.74629
Target:  5'- cUGCGAguagGUGAGGGUgGGGgCAUCGu -3'
miRNA:   3'- cACGCUg---CAUUUCCGgCCCaGUAGCc -5'
18773 3' -54.4 NC_004683.1 + 20496 0.67 0.735883
Target:  5'- -gGCcgGugGUGGAGGCCGGG----CGGg -3'
miRNA:   3'- caCG--CugCAUUUCCGGCCCaguaGCC- -5'
18773 3' -54.4 NC_004683.1 + 23912 0.67 0.714771
Target:  5'- -cGCGuagGCGUGgcGGCCGacGGcaUCGUCGGg -3'
miRNA:   3'- caCGC---UGCAUuuCCGGC--CC--AGUAGCC- -5'
18773 3' -54.4 NC_004683.1 + 1518 0.67 0.713706
Target:  5'- -aGCGGCGgcGAucggcguGGCCGGG-UAUCGc -3'
miRNA:   3'- caCGCUGCauUU-------CCGGCCCaGUAGCc -5'
18773 3' -54.4 NC_004683.1 + 44392 0.67 0.713706
Target:  5'- cUGCGACuGUGAcAGGucggugcCCGGGcgaUCGUCGGc -3'
miRNA:   3'- cACGCUG-CAUU-UCC-------GGCCC---AGUAGCC- -5'
18773 3' -54.4 NC_004683.1 + 44169 0.68 0.693337
Target:  5'- uUGCGucGCGgcAAGGUCGGaUCcUCGGg -3'
miRNA:   3'- cACGC--UGCauUUCCGGCCcAGuAGCC- -5'
18773 3' -54.4 NC_004683.1 + 25148 0.68 0.682527
Target:  5'- gGUGCGG-GUAgcGGCCugcucggcucGGUCAUCGGc -3'
miRNA:   3'- -CACGCUgCAUuuCCGGc---------CCAGUAGCC- -5'
18773 3' -54.4 NC_004683.1 + 41378 0.68 0.682527
Target:  5'- -gGUGGCGcgguGAGGCCGGGUagCAgaauggCGGc -3'
miRNA:   3'- caCGCUGCau--UUCCGGCCCA--GUa-----GCC- -5'
18773 3' -54.4 NC_004683.1 + 34921 0.68 0.671669
Target:  5'- uUGCGGCGcu--GGCaGGGUCAUCc- -3'
miRNA:   3'- cACGCUGCauuuCCGgCCCAGUAGcc -5'
18773 3' -54.4 NC_004683.1 + 26101 0.69 0.637823
Target:  5'- gGUGCGcgagugaacGCGUGGGGcCCGGcgauccuGUCAUCGGg -3'
miRNA:   3'- -CACGC---------UGCAUUUCcGGCC-------CAGUAGCC- -5'
18773 3' -54.4 NC_004683.1 + 4311 0.7 0.573496
Target:  5'- aGUGuCGGCGU--AGGCCGGccacGUCAcCGGc -3'
miRNA:   3'- -CAC-GCUGCAuuUCCGGCC----CAGUaGCC- -5'
18773 3' -54.4 NC_004683.1 + 56592 0.7 0.56271
Target:  5'- gGUGCGccuaccugccauGCGgugcGGCCGGGcaugCGUCGGg -3'
miRNA:   3'- -CACGC------------UGCauuuCCGGCCCa---GUAGCC- -5'
18773 3' -54.4 NC_004683.1 + 42586 0.71 0.478987
Target:  5'- -cGCGGCGgucGGGGCCG-GUCGUcCGGc -3'
miRNA:   3'- caCGCUGCau-UUCCGGCcCAGUA-GCC- -5'
18773 3' -54.4 NC_004683.1 + 44050 0.73 0.392766
Target:  5'- -cGCugaaacACGUGAAGGCCaaGGGUgAUCGGg -3'
miRNA:   3'- caCGc-----UGCAUUUCCGG--CCCAgUAGCC- -5'
18773 3' -54.4 NC_004683.1 + 13232 1.1 0.0013
Target:  5'- aGUGCGACGUAAAGGCCGGGUCAUCGGc -3'
miRNA:   3'- -CACGCUGCAUUUCCGGCCCAGUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.