miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18773 5' -65.2 NC_004683.1 + 25135 0.67 0.254958
Target:  5'- gGCCGccGUCaCCggugCGGGUAGCgGCCu -3'
miRNA:   3'- gCGGCuaCGG-GGag--GCCCGUCGgCGG- -5'
18773 5' -65.2 NC_004683.1 + 12254 0.67 0.248903
Target:  5'- uGCCGAUGCCCggcgCUGGugGCGGCauagGCUa -3'
miRNA:   3'- gCGGCUACGGGga--GGCC--CGUCGg---CGG- -5'
18773 5' -65.2 NC_004683.1 + 48044 0.67 0.248903
Target:  5'- gCGCuCGAaguaGUgCC-CCGGGguGCCGCg -3'
miRNA:   3'- -GCG-GCUa---CGgGGaGGCCCguCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 28057 0.67 0.248903
Target:  5'- aGCUGAUcuaCUUCUUCGGGCGagacauuggcGCCGCCc -3'
miRNA:   3'- gCGGCUAc--GGGGAGGCCCGU----------CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 46410 0.67 0.242967
Target:  5'- aCGCgGAccUGCCCgCacgUCGGGCAcaCCGCCu -3'
miRNA:   3'- -GCGgCU--ACGGG-Ga--GGCCCGUc-GGCGG- -5'
18773 5' -65.2 NC_004683.1 + 51647 0.67 0.242967
Target:  5'- cCGUCGAgGCCCUcguUCUGcgugcgcuGGCGGCgCGCCu -3'
miRNA:   3'- -GCGGCUaCGGGG---AGGC--------CCGUCG-GCGG- -5'
18773 5' -65.2 NC_004683.1 + 48953 0.67 0.233715
Target:  5'- -aCCGG-GUCaCCUCCGGGUacuggucccaugugcGGCCGUCg -3'
miRNA:   3'- gcGGCUaCGG-GGAGGCCCG---------------UCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 17587 0.67 0.231449
Target:  5'- gGCgauaGAUGCCUCUUCGGcuuuGCcGUCGCCg -3'
miRNA:   3'- gCGg---CUACGGGGAGGCC----CGuCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 4622 0.67 0.231449
Target:  5'- uGCCGGUGCaCCCUcgcaCCGGcCuGCgUGCCa -3'
miRNA:   3'- gCGGCUACG-GGGA----GGCCcGuCG-GCGG- -5'
18773 5' -65.2 NC_004683.1 + 18155 0.67 0.231449
Target:  5'- gGCCGugGUGCCCg-CCGGGgCgucguuagggaGGCUGCCc -3'
miRNA:   3'- gCGGC--UACGGGgaGGCCC-G-----------UCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 16864 0.67 0.230885
Target:  5'- uCGUCGucGCgCCCgagCCGGGCGaggacucGCCGCUg -3'
miRNA:   3'- -GCGGCuaCG-GGGa--GGCCCGU-------CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 21349 0.67 0.228084
Target:  5'- gCGgUGGUGCCCCUguucgucaccggcgaCUGGGCAuGCgGCg -3'
miRNA:   3'- -GCgGCUACGGGGA---------------GGCCCGU-CGgCGg -5'
18773 5' -65.2 NC_004683.1 + 12639 0.67 0.225864
Target:  5'- gGCCGcgGCgCCgcugCUGGGCccGCUGUCg -3'
miRNA:   3'- gCGGCuaCGgGGa---GGCCCGu-CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 17068 0.67 0.222568
Target:  5'- gGCUGGUGCCCC-CCggugguuaaaccgagGGGCA-CCaGCCc -3'
miRNA:   3'- gCGGCUACGGGGaGG---------------CCCGUcGG-CGG- -5'
18773 5' -65.2 NC_004683.1 + 2832 0.67 0.220394
Target:  5'- cCGCCGA-GCUCg-CCGcGGCcGCCGCg -3'
miRNA:   3'- -GCGGCUaCGGGgaGGC-CCGuCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 46099 0.67 0.220394
Target:  5'- cCGCUcg-GCCgCCgcgUCGGGCAGCacuCGCCg -3'
miRNA:   3'- -GCGGcuaCGG-GGa--GGCCCGUCG---GCGG- -5'
18773 5' -65.2 NC_004683.1 + 12065 0.68 0.215038
Target:  5'- aGCUGAUcgggcgacaGCCCCggugUGGGCAGCgGCg -3'
miRNA:   3'- gCGGCUA---------CGGGGag--GCCCGUCGgCGg -5'
18773 5' -65.2 NC_004683.1 + 28724 0.68 0.215038
Target:  5'- aCGCCGAgcGCCgCCaagUCUcGGCcgucGGCCGCCa -3'
miRNA:   3'- -GCGGCUa-CGG-GG---AGGcCCG----UCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 12765 0.68 0.215038
Target:  5'- uGCCG-UGCCcgCCUCggauCGGGuUAGCCGCg -3'
miRNA:   3'- gCGGCuACGG--GGAG----GCCC-GUCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 19955 0.68 0.209793
Target:  5'- uGCCGGaucucaGCCaCCguUCCGGuGCuGCCGCUg -3'
miRNA:   3'- gCGGCUa-----CGG-GG--AGGCC-CGuCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.