miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18774 3' -59.2 NC_004683.1 + 14397 1.07 0.000709
Target:  5'- cCGACCACCAGCGGCCCGUAUCGAGGUc -3'
miRNA:   3'- -GCUGGUGGUCGCCGGGCAUAGCUCCA- -5'
18774 3' -59.2 NC_004683.1 + 17882 0.73 0.191345
Target:  5'- cCGugCGCCAGCGGCgucaCGUugaccucuUCGAGGa -3'
miRNA:   3'- -GCugGUGGUCGCCGg---GCAu-------AGCUCCa -5'
18774 3' -59.2 NC_004683.1 + 4943 0.72 0.223274
Target:  5'- gCGGCgGCCAGCGGCgcaugCGcGUCGAGGc -3'
miRNA:   3'- -GCUGgUGGUCGCCGg----GCaUAGCUCCa -5'
18774 3' -59.2 NC_004683.1 + 17220 0.71 0.272767
Target:  5'- cCGACC-CCGGCGccCCCGUacaacGUCGAGGc -3'
miRNA:   3'- -GCUGGuGGUCGCc-GGGCA-----UAGCUCCa -5'
18774 3' -59.2 NC_004683.1 + 20533 0.71 0.272767
Target:  5'- aCGAUCACCGGCGGCaCCGg--CGgcaacggcGGGUu -3'
miRNA:   3'- -GCUGGUGGUCGCCG-GGCauaGC--------UCCA- -5'
18774 3' -59.2 NC_004683.1 + 22824 0.7 0.33069
Target:  5'- aCGAUU-CCAgGCGGCaCCGUAUCGAacGGUa -3'
miRNA:   3'- -GCUGGuGGU-CGCCG-GGCAUAGCU--CCA- -5'
18774 3' -59.2 NC_004683.1 + 21593 0.69 0.354631
Target:  5'- uGAUCACCAuCGGCgCGUGgggUGAGGg -3'
miRNA:   3'- gCUGGUGGUcGCCGgGCAUa--GCUCCa -5'
18774 3' -59.2 NC_004683.1 + 7360 0.69 0.362879
Target:  5'- aGACC-UCGGUGGCCaCGUucgucuggccGUCGGGGg -3'
miRNA:   3'- gCUGGuGGUCGCCGG-GCA----------UAGCUCCa -5'
18774 3' -59.2 NC_004683.1 + 4297 0.69 0.362879
Target:  5'- cCGGCCACguCAcCGGCCCGaucUCGGGGa -3'
miRNA:   3'- -GCUGGUG--GUcGCCGGGCau-AGCUCCa -5'
18774 3' -59.2 NC_004683.1 + 43210 0.69 0.362879
Target:  5'- cCGGCCACgCAGCcgcacGCCgGUcUCGGGGUc -3'
miRNA:   3'- -GCUGGUG-GUCGc----CGGgCAuAGCUCCA- -5'
18774 3' -59.2 NC_004683.1 + 15350 0.69 0.371258
Target:  5'- aGACCACCugguugggcagcAGCGGCCCGaacUCGAu-- -3'
miRNA:   3'- gCUGGUGG------------UCGCCGGGCau-AGCUcca -5'
18774 3' -59.2 NC_004683.1 + 6974 0.69 0.371258
Target:  5'- uCGuCgGCCGGCGGCCCagacGUCGAGa- -3'
miRNA:   3'- -GCuGgUGGUCGCCGGGca--UAGCUCca -5'
18774 3' -59.2 NC_004683.1 + 12017 0.68 0.397178
Target:  5'- uCGACgCggGCCAGCGcGCCCGcg-CGGGGc -3'
miRNA:   3'- -GCUG-G--UGGUCGC-CGGGCauaGCUCCa -5'
18774 3' -59.2 NC_004683.1 + 26544 0.68 0.415092
Target:  5'- gGGCUcgGCgGGCGGCCUGgAUCGcGGUg -3'
miRNA:   3'- gCUGG--UGgUCGCCGGGCaUAGCuCCA- -5'
18774 3' -59.2 NC_004683.1 + 37977 0.67 0.471665
Target:  5'- uGGgCGCCAGCGGCCCugcUCGAu-- -3'
miRNA:   3'- gCUgGUGGUCGCCGGGcauAGCUcca -5'
18774 3' -59.2 NC_004683.1 + 21551 0.67 0.471665
Target:  5'- -cGCCGCCAGCGGggCGUGU-GAGGc -3'
miRNA:   3'- gcUGGUGGUCGCCggGCAUAgCUCCa -5'
18774 3' -59.2 NC_004683.1 + 13019 0.67 0.491379
Target:  5'- cCGGCCACCgguggGGCGGCC---GUCGAGc- -3'
miRNA:   3'- -GCUGGUGG-----UCGCCGGgcaUAGCUCca -5'
18774 3' -59.2 NC_004683.1 + 13087 0.67 0.491379
Target:  5'- gGGCCACCGGC-GCCCGg--C-AGGa -3'
miRNA:   3'- gCUGGUGGUCGcCGGGCauaGcUCCa -5'
18774 3' -59.2 NC_004683.1 + 11941 0.67 0.491379
Target:  5'- uGAUUcagGCCAGCGcGCCCGcg-CGGGGc -3'
miRNA:   3'- gCUGG---UGGUCGC-CGGGCauaGCUCCa -5'
18774 3' -59.2 NC_004683.1 + 39805 0.67 0.491379
Target:  5'- uGGCCggaGCCAGCGGUCgaUGaGUUGGGGUc -3'
miRNA:   3'- gCUGG---UGGUCGCCGG--GCaUAGCUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.