Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18774 | 5' | -54.2 | NC_004683.1 | + | 32612 | 0.66 | 0.785624 |
Target: 5'- aGCcGCUCGcCUCGUaCGCUUCgcccagccgcaguugGUCGg -3' miRNA: 3'- -UGuCGAGC-GAGCAcGCGAAGaa-------------CAGC- -5' |
|||||||
18774 | 5' | -54.2 | NC_004683.1 | + | 52734 | 0.66 | 0.758111 |
Target: 5'- gGCGGCgaugCGUUCG-GCGCgUUCcucGUCGg -3' miRNA: 3'- -UGUCGa---GCGAGCaCGCG-AAGaa-CAGC- -5' |
|||||||
18774 | 5' | -54.2 | NC_004683.1 | + | 27155 | 0.69 | 0.583073 |
Target: 5'- cGCAGUgCGCUCGuUGCcCgaCUUGUCGg -3' miRNA: 3'- -UGUCGaGCGAGC-ACGcGaaGAACAGC- -5' |
|||||||
18774 | 5' | -54.2 | NC_004683.1 | + | 14362 | 1.09 | 0.001198 |
Target: 5'- gACAGCUCGCUCGUGCGCUUCUUGUCGa -3' miRNA: 3'- -UGUCGAGCGAGCACGCGAAGAACAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home