miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18775 3' -59.7 NC_004683.1 + 23389 0.68 0.442706
Target:  5'- gGAUGCCGCGcUGcagcgggaugacgauGcUCGUGCCGGGGa -3'
miRNA:   3'- gCUACGGCGCcAU---------------CaGGCGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 56310 0.68 0.438991
Target:  5'- uCGAUGUCG-GGUug-CCaGCGUCGGGGa -3'
miRNA:   3'- -GCUACGGCgCCAucaGG-CGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 15610 0.68 0.429782
Target:  5'- aGAUcgugGCCGCGGgcacgCCGCuGCgGAGGu -3'
miRNA:   3'- gCUA----CGGCGCCauca-GGCG-CGgCUCC- -5'
18775 3' -59.7 NC_004683.1 + 33600 0.68 0.41171
Target:  5'- gCGAUugaGCCGCuGGUAGUaCCGCa-CGGGGc -3'
miRNA:   3'- -GCUA---CGGCG-CCAUCA-GGCGcgGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 15161 0.68 0.41171
Target:  5'- cCGAUGCUGgGGUGGcCUGgG-UGAGGa -3'
miRNA:   3'- -GCUACGGCgCCAUCaGGCgCgGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 48701 0.68 0.410819
Target:  5'- ---gGUCGCGG-AGUCCGCgggcccaGUCGGGGu -3'
miRNA:   3'- gcuaCGGCGCCaUCAGGCG-------CGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 52018 0.68 0.402853
Target:  5'- cCGAaauCUGCGGcguucCCGCGCCGAGGc -3'
miRNA:   3'- -GCUac-GGCGCCauca-GGCGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 20608 0.68 0.402853
Target:  5'- cCGGUGCCGcCGGUGa-UCGUGCCGGa- -3'
miRNA:   3'- -GCUACGGC-GCCAUcaGGCGCGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 45235 0.68 0.394117
Target:  5'- ---cGCUGCGGUcggccAGcCCGUGCUGAGa -3'
miRNA:   3'- gcuaCGGCGCCA-----UCaGGCGCGGCUCc -5'
18775 3' -59.7 NC_004683.1 + 48220 0.68 0.394117
Target:  5'- uGAUGCaCGCGGcGGgaacaaaUCGCGCCGAa- -3'
miRNA:   3'- gCUACG-GCGCCaUCa------GGCGCGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 241 0.69 0.385505
Target:  5'- gCGAUGCCGCcgcugcuGcCCGCGgCGGGGc -3'
miRNA:   3'- -GCUACGGCGccau---CaGGCGCgGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 13953 0.69 0.377018
Target:  5'- aGGUGCCGCGugauGUCaGCGCCGGcgcGGu -3'
miRNA:   3'- gCUACGGCGCcau-CAGgCGCGGCU---CC- -5'
18775 3' -59.7 NC_004683.1 + 44855 0.69 0.377018
Target:  5'- ---cGCCGUGGUGGcCCG-GCCugGAGGc -3'
miRNA:   3'- gcuaCGGCGCCAUCaGGCgCGG--CUCC- -5'
18775 3' -59.7 NC_004683.1 + 18159 0.69 0.368658
Target:  5'- aGGUgGCCGUGGUG--CC-CGCCGGGGc -3'
miRNA:   3'- gCUA-CGGCGCCAUcaGGcGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 30504 0.69 0.360426
Target:  5'- uCGAUGCCGaGGUGGa-UGuCGCUGAGGc -3'
miRNA:   3'- -GCUACGGCgCCAUCagGC-GCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 42576 0.69 0.34435
Target:  5'- cCGAgcgcGCCGCGGcGGUCgGgGCCGGu- -3'
miRNA:   3'- -GCUa---CGGCGCCaUCAGgCgCGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 49051 0.7 0.336507
Target:  5'- cCGAUGCaCGCGcccgaaugGGUcaCCGCGCCGcGGg -3'
miRNA:   3'- -GCUACG-GCGCca------UCA--GGCGCGGCuCC- -5'
18775 3' -59.7 NC_004683.1 + 21841 0.7 0.321216
Target:  5'- uCGGUgGCCGCGGUcguugaaccaccGGUCUGC-CCGcGGg -3'
miRNA:   3'- -GCUA-CGGCGCCA------------UCAGGCGcGGCuCC- -5'
18775 3' -59.7 NC_004683.1 + 4918 0.7 0.321216
Target:  5'- aCGAgGCUGuCGaac-UCCGCGCCGAGGg -3'
miRNA:   3'- -GCUaCGGC-GCcaucAGGCGCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 41050 0.71 0.278492
Target:  5'- gCGAUGCgCGCGGccaGGUCgGCgugGCCGAcGGg -3'
miRNA:   3'- -GCUACG-GCGCCa--UCAGgCG---CGGCU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.