miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18775 5' -56.1 NC_004683.1 + 23125 0.66 0.697962
Target:  5'- gCgCUCAUCGAGAA-GCUcaUCGACGaCCg -3'
miRNA:   3'- aGgGAGUGGCUCUUgUGG--AGCUGC-GG- -5'
18775 5' -56.1 NC_004683.1 + 45494 0.66 0.697962
Target:  5'- cCCCgCACCGAc--CGgCUCGuCGCCa -3'
miRNA:   3'- aGGGaGUGGCUcuuGUgGAGCuGCGG- -5'
18775 5' -56.1 NC_004683.1 + 38139 0.66 0.697962
Target:  5'- -gCUUCGuCCGAGcGGCACg-CGGCGCCc -3'
miRNA:   3'- agGGAGU-GGCUC-UUGUGgaGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 2116 0.66 0.694778
Target:  5'- uUCCUguugUGCCGucacGAccagaacggcucccACACCUCGACaGCCg -3'
miRNA:   3'- -AGGGa---GUGGCu---CU--------------UGUGGAGCUG-CGG- -5'
18775 5' -56.1 NC_004683.1 + 12686 0.66 0.691587
Target:  5'- aCCCgauCCGAGGcggGCAcggcauccucggcauCCUCGGCGCg -3'
miRNA:   3'- aGGGaguGGCUCU---UGU---------------GGAGCUGCGg -5'
18775 5' -56.1 NC_004683.1 + 54035 0.66 0.687327
Target:  5'- aUCCgCGCCGAcGAACucgcccagcuccGCUcCGACGCCa -3'
miRNA:   3'- aGGGaGUGGCU-CUUG------------UGGaGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 56193 0.66 0.687327
Target:  5'- aCCCgCAUCGucAGCuucuACCUCGGcCGCCa -3'
miRNA:   3'- aGGGaGUGGCucUUG----UGGAGCU-GCGG- -5'
18775 5' -56.1 NC_004683.1 + 45659 0.66 0.687327
Target:  5'- -aCCagGCCGucaacGAGCGCCUUGACcguggGCCa -3'
miRNA:   3'- agGGagUGGCu----CUUGUGGAGCUG-----CGG- -5'
18775 5' -56.1 NC_004683.1 + 45515 0.66 0.687327
Target:  5'- -aCCUCG-CGAGucuugcGCGCCUUGGcCGCCc -3'
miRNA:   3'- agGGAGUgGCUCu-----UGUGGAGCU-GCGG- -5'
18775 5' -56.1 NC_004683.1 + 12452 0.67 0.680921
Target:  5'- gCCCUCGgcuUCGAGcuccAGCACgcggauacgcgccgaCUCGACGCUg -3'
miRNA:   3'- aGGGAGU---GGCUC----UUGUG---------------GAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 17890 0.67 0.676641
Target:  5'- uUUCgUCGCCGu--GCGCCagCGGCGUCa -3'
miRNA:   3'- -AGGgAGUGGCucuUGUGGa-GCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 32404 0.67 0.676641
Target:  5'- gUCUgCAgCGuGAACGCCuUCGACGCg -3'
miRNA:   3'- aGGGaGUgGCuCUUGUGG-AGCUGCGg -5'
18775 5' -56.1 NC_004683.1 + 5024 0.67 0.676641
Target:  5'- gCCCgacagCAUCGAGGACugC-CGAUuCCg -3'
miRNA:   3'- aGGGa----GUGGCUCUUGugGaGCUGcGG- -5'
18775 5' -56.1 NC_004683.1 + 2836 0.67 0.676641
Target:  5'- gCCgC-CGCCGAGcuCGCCgCGGcCGCCg -3'
miRNA:   3'- aGG-GaGUGGCUCuuGUGGaGCU-GCGG- -5'
18775 5' -56.1 NC_004683.1 + 18862 0.67 0.674499
Target:  5'- gCCCUUGCCgucguucaagcuggcGAgGAACGCCUCccacgacgacagguuGAUGCCg -3'
miRNA:   3'- aGGGAGUGG---------------CU-CUUGUGGAG---------------CUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 8109 0.67 0.670209
Target:  5'- cCCCgaggcuggCACCGAcaaccccguGAuccaacuggacuucuACGCgCUCGGCGCCg -3'
miRNA:   3'- aGGGa-------GUGGCU---------CU---------------UGUG-GAGCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 24645 0.67 0.670209
Target:  5'- gCCCaggcCGCCGAGuucgcGCGCCUgcugcgcaccaacccCGACGUCa -3'
miRNA:   3'- aGGGa---GUGGCUCu----UGUGGA---------------GCUGCGG- -5'
18775 5' -56.1 NC_004683.1 + 14435 0.67 0.665914
Target:  5'- gUUgCUCAcguCCGGGGGCGCCUUGAa-CCa -3'
miRNA:   3'- -AGgGAGU---GGCUCUUGUGGAGCUgcGG- -5'
18775 5' -56.1 NC_004683.1 + 20445 0.67 0.665914
Target:  5'- aUCCCUCGCCGGccuUACCUggUGACGa- -3'
miRNA:   3'- -AGGGAGUGGCUcuuGUGGA--GCUGCgg -5'
18775 5' -56.1 NC_004683.1 + 4486 0.67 0.665914
Target:  5'- aCCCUCcgagcCCGuagguGAGCACCcgUCGACaCCg -3'
miRNA:   3'- aGGGAGu----GGCu----CUUGUGG--AGCUGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.