miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18776 3' -50.8 NC_004683.1 + 15705 0.66 0.906942
Target:  5'- aGUGgauaccucCGCAGCGGCGUGcCCgcggccacGAUCu -3'
miRNA:   3'- -CACauu-----GCGUCGCCGUAUaGGa-------CUAG- -5'
18776 3' -50.8 NC_004683.1 + 33997 0.66 0.906942
Target:  5'- -gGUAAgggUGCAGCGGCGUucagCUUGcGUCa -3'
miRNA:   3'- caCAUU---GCGUCGCCGUAua--GGAC-UAG- -5'
18776 3' -50.8 NC_004683.1 + 25097 0.66 0.899888
Target:  5'- -aGUGGCGgucuggccaaccCGGCGGCGUugccgGUCCUGGc- -3'
miRNA:   3'- caCAUUGC------------GUCGCCGUA-----UAGGACUag -5'
18776 3' -50.8 NC_004683.1 + 43492 0.66 0.899888
Target:  5'- ----cAUGCAGuCGGCGUAgagCCgGAUCg -3'
miRNA:   3'- cacauUGCGUC-GCCGUAUa--GGaCUAG- -5'
18776 3' -50.8 NC_004683.1 + 56370 0.66 0.884906
Target:  5'- aGUGUGcgggGCGCAGUgauccaggaGGCGUguacguGUCCUGcgCg -3'
miRNA:   3'- -CACAU----UGCGUCG---------CCGUA------UAGGACuaG- -5'
18776 3' -50.8 NC_004683.1 + 26151 0.66 0.884906
Target:  5'- ---cGGCGCGGCGGUcucgcugAUCCUcgcGAUCa -3'
miRNA:   3'- cacaUUGCGUCGCCGua-----UAGGA---CUAG- -5'
18776 3' -50.8 NC_004683.1 + 45086 0.67 0.876989
Target:  5'- uUGUugacGACGUGGCuGGCAUcUCCaGGUCg -3'
miRNA:   3'- cACA----UUGCGUCG-CCGUAuAGGaCUAG- -5'
18776 3' -50.8 NC_004683.1 + 8728 0.67 0.84264
Target:  5'- -cGUcGCGCAGCuGCccAUCCUGggCg -3'
miRNA:   3'- caCAuUGCGUCGcCGuaUAGGACuaG- -5'
18776 3' -50.8 NC_004683.1 + 12873 0.68 0.833426
Target:  5'- -gGUAucCGcCAGCGGCGUAUCCcgccgGGUa -3'
miRNA:   3'- caCAUu-GC-GUCGCCGUAUAGGa----CUAg -5'
18776 3' -50.8 NC_004683.1 + 25533 0.68 0.814315
Target:  5'- -cGUGcCGCuGUGGCucggCCUGGUCg -3'
miRNA:   3'- caCAUuGCGuCGCCGuauaGGACUAG- -5'
18776 3' -50.8 NC_004683.1 + 13107 0.7 0.708222
Target:  5'- -aGUGACGCGGCGGCug--CCcgGAg- -3'
miRNA:   3'- caCAUUGCGUCGCCGuauaGGa-CUag -5'
18776 3' -50.8 NC_004683.1 + 5479 0.71 0.662775
Target:  5'- aUGUGugGCA-CGGCGUGUCCUcGGc- -3'
miRNA:   3'- cACAUugCGUcGCCGUAUAGGA-CUag -5'
18776 3' -50.8 NC_004683.1 + 17360 0.71 0.662775
Target:  5'- -----cCGCGGCGGCcucAUGUCgCUGAUCu -3'
miRNA:   3'- cacauuGCGUCGCCG---UAUAG-GACUAG- -5'
18776 3' -50.8 NC_004683.1 + 753 0.72 0.605344
Target:  5'- ------aGCAGCGGCucauuUCCUGGUCg -3'
miRNA:   3'- cacauugCGUCGCCGuau--AGGACUAG- -5'
18776 3' -50.8 NC_004683.1 + 46795 0.74 0.469003
Target:  5'- -aGUuGCGCGGCGGCGgGUCCaagcaccgcccgguUGAUCa -3'
miRNA:   3'- caCAuUGCGUCGCCGUaUAGG--------------ACUAG- -5'
18776 3' -50.8 NC_004683.1 + 15259 1.11 0.001907
Target:  5'- gGUGUAACGCAGCGGCAUAUCCUGAUCg -3'
miRNA:   3'- -CACAUUGCGUCGCCGUAUAGGACUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.