miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18776 5' -58.4 NC_004683.1 + 32573 0.66 0.586322
Target:  5'- cCGG--CUGCACGAugCCCgGCauacgUGCGGg -3'
miRNA:   3'- -GCCuaGGCGUGCUugGGGaCG-----ACGCU- -5'
18776 5' -58.4 NC_004683.1 + 663 0.66 0.575698
Target:  5'- gGGAUCCgGCGgGAACCCCgccaaGUcGCa- -3'
miRNA:   3'- gCCUAGG-CGUgCUUGGGGa----CGaCGcu -5'
18776 5' -58.4 NC_004683.1 + 220 0.66 0.575698
Target:  5'- aCGGAUCCcacuccgagcGcCGCGAugccGCCgCUGCUGCc- -3'
miRNA:   3'- -GCCUAGG----------C-GUGCU----UGGgGACGACGcu -5'
18776 5' -58.4 NC_004683.1 + 9603 0.66 0.575698
Target:  5'- aGaGGUCCGCACGGuccagaaaugGCCaCUGCgcaaggGCGGa -3'
miRNA:   3'- gC-CUAGGCGUGCU----------UGGgGACGa-----CGCU- -5'
18776 5' -58.4 NC_004683.1 + 8272 0.66 0.565118
Target:  5'- aGGAacagcaUUCGC-CGAuGCCCCUGCUuggccGCGGc -3'
miRNA:   3'- gCCU------AGGCGuGCU-UGGGGACGA-----CGCU- -5'
18776 5' -58.4 NC_004683.1 + 20524 0.66 0.544121
Target:  5'- cCGGccAUCgGCGCGGugGCCCCUGCaccGCc- -3'
miRNA:   3'- -GCC--UAGgCGUGCU--UGGGGACGa--CGcu -5'
18776 5' -58.4 NC_004683.1 + 56508 0.66 0.530608
Target:  5'- aGGcUCgGCACGGuguagcuggugucaACCCCUGCgcgcuguugccaUGCGGu -3'
miRNA:   3'- gCCuAGgCGUGCU--------------UGGGGACG------------ACGCU- -5'
18776 5' -58.4 NC_004683.1 + 56911 0.67 0.523384
Target:  5'- gCGGcaCCcCGCGAGCCUCUGacCUGCGGa -3'
miRNA:   3'- -GCCuaGGcGUGCUUGGGGAC--GACGCU- -5'
18776 5' -58.4 NC_004683.1 + 7960 0.67 0.523383
Target:  5'- ---uUCUGCGCGAugCCCUGC-GCc- -3'
miRNA:   3'- gccuAGGCGUGCUugGGGACGaCGcu -5'
18776 5' -58.4 NC_004683.1 + 51202 0.67 0.502957
Target:  5'- ----cCCGCACGAgcgcgagcGCCCCUGUgGCGu -3'
miRNA:   3'- gccuaGGCGUGCU--------UGGGGACGaCGCu -5'
18776 5' -58.4 NC_004683.1 + 42805 0.67 0.502957
Target:  5'- cCGGAUaCCGacaGCGAGCCCCgGUcaGCGu -3'
miRNA:   3'- -GCCUA-GGCg--UGCUUGGGGaCGa-CGCu -5'
18776 5' -58.4 NC_004683.1 + 12643 0.69 0.406858
Target:  5'- gCGGcgCCGCugcUGGGCCCgCUGUcgGCGAu -3'
miRNA:   3'- -GCCuaGGCGu--GCUUGGG-GACGa-CGCU- -5'
18776 5' -58.4 NC_004683.1 + 5672 0.7 0.330884
Target:  5'- uCGaGAUCgGCACGAAgCCCUGC-GCc- -3'
miRNA:   3'- -GC-CUAGgCGUGCUUgGGGACGaCGcu -5'
18776 5' -58.4 NC_004683.1 + 28482 0.75 0.176244
Target:  5'- gCGGAaCCGCcCGcGCCCCgGCUGCGu -3'
miRNA:   3'- -GCCUaGGCGuGCuUGGGGaCGACGCu -5'
18776 5' -58.4 NC_004683.1 + 2649 0.76 0.138555
Target:  5'- aGGAUCUGCA--AAUCCCUGCUGcCGAa -3'
miRNA:   3'- gCCUAGGCGUgcUUGGGGACGAC-GCU- -5'
18776 5' -58.4 NC_004683.1 + 15223 1.08 0.000622
Target:  5'- gCGGAUCCGCACGAACCCCUGCUGCGAc -3'
miRNA:   3'- -GCCUAGGCGUGCUUGGGGACGACGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.