miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18777 5' -64.3 NC_004683.1 + 46680 0.66 0.33096
Target:  5'- -gCCUuGCCGUCGCGGcccUCGACCgGCa -3'
miRNA:   3'- ggGGGcCGGCGGUGUCc--AGCUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 10286 0.66 0.33096
Target:  5'- uUCUUCGGCgGCCuguuccUCGGCCCGCu -3'
miRNA:   3'- -GGGGGCCGgCGGugucc-AGCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 35017 0.66 0.323577
Target:  5'- gCCgaGGCCGUCGCAacGGaUGACCCuGCc -3'
miRNA:   3'- gGGggCCGGCGGUGU--CCaGCUGGG-CG- -5'
18777 5' -64.3 NC_004683.1 + 15669 0.66 0.323577
Target:  5'- aCCUCUGGaCCGgcgaaCCAgAGGUUGGCuuGUg -3'
miRNA:   3'- -GGGGGCC-GGC-----GGUgUCCAGCUGggCG- -5'
18777 5' -64.3 NC_004683.1 + 40667 0.66 0.323577
Target:  5'- aCUgCGGCCugGCCG-AGGUCGgucACCUGCu -3'
miRNA:   3'- gGGgGCCGG--CGGUgUCCAGC---UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 24194 0.66 0.323577
Target:  5'- gCCgCGGCUGCCGuc-GUCGACCUuGCc -3'
miRNA:   3'- gGGgGCCGGCGGUgucCAGCUGGG-CG- -5'
18777 5' -64.3 NC_004683.1 + 5054 0.66 0.323577
Target:  5'- gCCaCGGCCGCCcuGCgAGGaaccggccUCGACgCGCa -3'
miRNA:   3'- gGGgGCCGGCGG--UG-UCC--------AGCUGgGCG- -5'
18777 5' -64.3 NC_004683.1 + 2226 0.66 0.323577
Target:  5'- aCCCCaGGcCCGCCAgCAcGGcCacGCCCGCc -3'
miRNA:   3'- gGGGG-CC-GGCGGU-GU-CCaGc-UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 16082 0.66 0.323577
Target:  5'- gCCCUuGUCGUugCGCGGGUCGguGCCCGa -3'
miRNA:   3'- gGGGGcCGGCG--GUGUCCAGC--UGGGCg -5'
18777 5' -64.3 NC_004683.1 + 40489 0.66 0.323577
Target:  5'- -gCUCGGUggagCGCgGCAGGUCGAgCUCGUc -3'
miRNA:   3'- ggGGGCCG----GCGgUGUCCAGCU-GGGCG- -5'
18777 5' -64.3 NC_004683.1 + 13365 0.66 0.322845
Target:  5'- gUCUCCGGUggcggcggcacgcUGCCAuucaugggcCAGGgUGGCCCGCa -3'
miRNA:   3'- -GGGGGCCG-------------GCGGU---------GUCCaGCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 34888 0.66 0.316317
Target:  5'- uCCCCUGGCCGCgACGa---GAUgCGCc -3'
miRNA:   3'- -GGGGGCCGGCGgUGUccagCUGgGCG- -5'
18777 5' -64.3 NC_004683.1 + 43837 0.66 0.316317
Target:  5'- aCCUCGGCCG-CGCucGGUCucgaGCCCGg -3'
miRNA:   3'- gGGGGCCGGCgGUGu-CCAGc---UGGGCg -5'
18777 5' -64.3 NC_004683.1 + 49091 0.66 0.316317
Target:  5'- uUCCCGGUCgggcuugaggGCgGCGGGaUCGcggcggGCCCGCg -3'
miRNA:   3'- gGGGGCCGG----------CGgUGUCC-AGC------UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 16524 0.66 0.316317
Target:  5'- aUCUCCaGCagCGCCuGCGGGUUGAgCCCGUc -3'
miRNA:   3'- -GGGGGcCG--GCGG-UGUCCAGCU-GGGCG- -5'
18777 5' -64.3 NC_004683.1 + 17747 0.66 0.316317
Target:  5'- aUCgCCGGCCugGUCAaGGG-CGACCCGg -3'
miRNA:   3'- -GGgGGCCGG--CGGUgUCCaGCUGGGCg -5'
18777 5' -64.3 NC_004683.1 + 13016 0.66 0.315598
Target:  5'- gCCaCCgguggggCGGCCGUCgaGCAGGUUGACgagauccucgaCCGCg -3'
miRNA:   3'- -GG-GG-------GCCGGCGG--UGUCCAGCUG-----------GGCG- -5'
18777 5' -64.3 NC_004683.1 + 53722 0.66 0.314163
Target:  5'- gCCUCaGCCGCgGcCAGGUCGcggcgggccugaucGCgCCGCa -3'
miRNA:   3'- gGGGGcCGGCGgU-GUCCAGC--------------UG-GGCG- -5'
18777 5' -64.3 NC_004683.1 + 43030 0.67 0.309181
Target:  5'- gCCUCGGCCuugcGCCACAugcccgucgcGGUCGGCuucuCCGa -3'
miRNA:   3'- gGGGGCCGG----CGGUGU----------CCAGCUG----GGCg -5'
18777 5' -64.3 NC_004683.1 + 33133 0.67 0.304959
Target:  5'- gCCuuGGUCGCC-CcGGUCGgucaacuacuugcugGCCUGCu -3'
miRNA:   3'- gGGggCCGGCGGuGuCCAGC---------------UGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.