miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18778 3' -58.5 NC_004683.1 + 6930 0.66 0.557028
Target:  5'- cACUGaGACCgaggcggccgacUGGCGGcgGGcgguggugcagcucgUCGGCCGg -3'
miRNA:   3'- cUGAC-CUGG------------ACCGCCuaCU---------------AGCCGGU- -5'
18778 3' -58.5 NC_004683.1 + 42588 0.66 0.542246
Target:  5'- cGGCggucgGGGCCggucguccGGCugGGGUGGUCGGCg- -3'
miRNA:   3'- -CUGa----CCUGGa-------CCG--CCUACUAGCCGgu -5'
18778 3' -58.5 NC_004683.1 + 18634 0.66 0.511037
Target:  5'- uGCUGGcCCUGGUGGGguucuUCGuGCCc -3'
miRNA:   3'- cUGACCuGGACCGCCUacu--AGC-CGGu -5'
18778 3' -58.5 NC_004683.1 + 24073 0.67 0.49065
Target:  5'- gGGC-GGGCggUGGCGuGGUGAUCGcGCCGa -3'
miRNA:   3'- -CUGaCCUGg-ACCGC-CUACUAGC-CGGU- -5'
18778 3' -58.5 NC_004683.1 + 20006 0.67 0.480599
Target:  5'- -uCUGGGCUguuccggugGGCGGugGUGGUcgCGGCCAg -3'
miRNA:   3'- cuGACCUGGa--------CCGCC--UACUA--GCCGGU- -5'
18778 3' -58.5 NC_004683.1 + 51056 0.67 0.460806
Target:  5'- ---cGGcGCCuUGGCGGcgGGUgCGGCCGg -3'
miRNA:   3'- cugaCC-UGG-ACCGCCuaCUA-GCCGGU- -5'
18778 3' -58.5 NC_004683.1 + 51149 0.67 0.451072
Target:  5'- cGACUGGACggccacgUGGCGGAacugGAUcCGGCg- -3'
miRNA:   3'- -CUGACCUGg------ACCGCCUa---CUA-GCCGgu -5'
18778 3' -58.5 NC_004683.1 + 29182 0.67 0.451072
Target:  5'- cGGCacgGGACCUGGCuGAUcaauaCGGCCGa -3'
miRNA:   3'- -CUGa--CCUGGACCGcCUAcua--GCCGGU- -5'
18778 3' -58.5 NC_004683.1 + 21375 0.67 0.451072
Target:  5'- cGACUGGGCaugcGGCGcuGAUGucgCGGCCc -3'
miRNA:   3'- -CUGACCUGga--CCGC--CUACua-GCCGGu -5'
18778 3' -58.5 NC_004683.1 + 28607 0.68 0.435737
Target:  5'- cGGCUGGAagucgacgccgaaggUUUGGCGGccGA-CGGCCGa -3'
miRNA:   3'- -CUGACCU---------------GGACCGCCuaCUaGCCGGU- -5'
18778 3' -58.5 NC_004683.1 + 21982 0.68 0.43195
Target:  5'- cGGgUGGugCUGGCGc--GcgCGGCCAa -3'
miRNA:   3'- -CUgACCugGACCGCcuaCuaGCCGGU- -5'
18778 3' -58.5 NC_004683.1 + 20393 0.68 0.422568
Target:  5'- cACUGGcAgCUGGCGGcgcacccgGggCGGCCAa -3'
miRNA:   3'- cUGACC-UgGACCGCCua------CuaGCCGGU- -5'
18778 3' -58.5 NC_004683.1 + 9790 0.69 0.3863
Target:  5'- aACacGACCUGGCaGGUGAU-GGCCAa -3'
miRNA:   3'- cUGacCUGGACCGcCUACUAgCCGGU- -5'
18778 3' -58.5 NC_004683.1 + 5965 0.69 0.360481
Target:  5'- uGCUGGGCCggccGGUGGGUGAggcgaGGCg- -3'
miRNA:   3'- cUGACCUGGa---CCGCCUACUag---CCGgu -5'
18778 3' -58.5 NC_004683.1 + 40666 0.72 0.243701
Target:  5'- cACUGcGGCCUGGCcGA-GGUCGGUCAc -3'
miRNA:   3'- cUGAC-CUGGACCGcCUaCUAGCCGGU- -5'
18778 3' -58.5 NC_004683.1 + 16861 1.08 0.000518
Target:  5'- cGACUGGACCUGGCGGAUGAUCGGCCAa -3'
miRNA:   3'- -CUGACCUGGACCGCCUACUAGCCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.