miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18778 5' -56.6 NC_004683.1 + 1362 0.68 0.563217
Target:  5'- cGCCGAGUucGGCCG-CGAGcgCCuCGGc -3'
miRNA:   3'- -CGGCUCAc-UCGGUgGCUCuaGGuGCC- -5'
18778 5' -56.6 NC_004683.1 + 48715 0.68 0.563217
Target:  5'- gGCCGccGUGcauuGGUCGCgGAG-UCCGCGGg -3'
miRNA:   3'- -CGGCu-CAC----UCGGUGgCUCuAGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 26089 0.68 0.542226
Target:  5'- cGUCGAGcGcaggaacgcGGCCAgCGAGAUcgCCGCGGu -3'
miRNA:   3'- -CGGCUCaC---------UCGGUgGCUCUA--GGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 679 0.69 0.531827
Target:  5'- gGCCGAGUuc-CUGCuCGGGAUCCgGCGGg -3'
miRNA:   3'- -CGGCUCAcucGGUG-GCUCUAGG-UGCC- -5'
18778 5' -56.6 NC_004683.1 + 8646 0.69 0.531827
Target:  5'- aCCGAGUGcGUCGCgGAacgCCACGGc -3'
miRNA:   3'- cGGCUCACuCGGUGgCUcuaGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 41885 0.69 0.521501
Target:  5'- gGCCGAG-GGGCgC-CCGAGcGUCUACGc -3'
miRNA:   3'- -CGGCUCaCUCG-GuGGCUC-UAGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 26439 0.69 0.521501
Target:  5'- cGCCGAGUuGGCCgcagugcacACCGcGAUCCA-GGc -3'
miRNA:   3'- -CGGCUCAcUCGG---------UGGCuCUAGGUgCC- -5'
18778 5' -56.6 NC_004683.1 + 51296 0.69 0.517392
Target:  5'- cGCCGAGcuggaGGGCCGCCGAuGAaccucaacgccagCCGCGa -3'
miRNA:   3'- -CGGCUCa----CUCGGUGGCU-CUa------------GGUGCc -5'
18778 5' -56.6 NC_004683.1 + 55660 0.69 0.491018
Target:  5'- gGCCGAcGUaGAGCgUGCCGGGGUUCAUGu -3'
miRNA:   3'- -CGGCU-CA-CUCG-GUGGCUCUAGGUGCc -5'
18778 5' -56.6 NC_004683.1 + 49063 0.69 0.491018
Target:  5'- cCCGAaUGGGUCACCGcg--CCGCGGg -3'
miRNA:   3'- cGGCUcACUCGGUGGCucuaGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 17989 0.7 0.4751
Target:  5'- gGCCGGGUGGGCCACUgcgcuguguggcguuGAGcugaacgcgCUGCGGc -3'
miRNA:   3'- -CGGCUCACUCGGUGG---------------CUCua-------GGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 43598 0.7 0.471161
Target:  5'- aGCUGucGGUGAcgacGUCGCCGAcGGUCUGCGGu -3'
miRNA:   3'- -CGGC--UCACU----CGGUGGCU-CUAGGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 1650 0.7 0.461387
Target:  5'- cGCCGc--GGGCCGCCGGGAcgauUCCAacgUGGa -3'
miRNA:   3'- -CGGCucaCUCGGUGGCUCU----AGGU---GCC- -5'
18778 5' -56.6 NC_004683.1 + 24439 0.7 0.432727
Target:  5'- aGCCGcc--GGCCACCGAGcgCCGCa- -3'
miRNA:   3'- -CGGCucacUCGGUGGCUCuaGGUGcc -5'
18778 5' -56.6 NC_004683.1 + 41099 0.71 0.423406
Target:  5'- cGCCGAGgucacuGCC-CUGGGGUCCGCa- -3'
miRNA:   3'- -CGGCUCacu---CGGuGGCUCUAGGUGcc -5'
18778 5' -56.6 NC_004683.1 + 40604 0.71 0.387362
Target:  5'- aUCGAGUGGcCCGCCGAGGggggcgCCguGCGGg -3'
miRNA:   3'- cGGCUCACUcGGUGGCUCUa-----GG--UGCC- -5'
18778 5' -56.6 NC_004683.1 + 42873 0.72 0.353396
Target:  5'- uGCCGAGUucGAGauccucgaCC-CCGAGGUgCACGGg -3'
miRNA:   3'- -CGGCUCA--CUC--------GGuGGCUCUAgGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 44736 0.72 0.342016
Target:  5'- cGCCGAGgccGAcaagcucGUCGCCGAGAUCCaaaccuacgacccgGCGGc -3'
miRNA:   3'- -CGGCUCa--CU-------CGGUGGCUCUAGG--------------UGCC- -5'
18778 5' -56.6 NC_004683.1 + 23805 0.72 0.337221
Target:  5'- cGCCGGGgugGuGCCGCCGccGGugccgCCGCGGc -3'
miRNA:   3'- -CGGCUCa--CuCGGUGGC--UCua---GGUGCC- -5'
18778 5' -56.6 NC_004683.1 + 20706 0.72 0.329338
Target:  5'- uGCCGGGUGGGCCA--GGGG-CCACGu -3'
miRNA:   3'- -CGGCUCACUCGGUggCUCUaGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.