miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18779 3' -58.9 NC_004683.1 + 2143 0.66 0.548235
Target:  5'- gGCGugGCCGuGCuGGCGGG-CCUgggguggucccugauUGCCg -3'
miRNA:   3'- gUGCugUGGU-CG-CCGCUCaGGA---------------GCGG- -5'
18779 3' -58.9 NC_004683.1 + 1392 0.66 0.544087
Target:  5'- gCACGACaaGCCGGCGauCGAGgacgCCcCGCUg -3'
miRNA:   3'- -GUGCUG--UGGUCGCc-GCUCa---GGaGCGG- -5'
18779 3' -58.9 NC_004683.1 + 1581 0.66 0.544087
Target:  5'- gGCGGC-CC-GCGGCGGcaaCgUCGCCa -3'
miRNA:   3'- gUGCUGuGGuCGCCGCUca-GgAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 24399 0.66 0.533761
Target:  5'- gACGAgGCCAccGCGGCGA-UCgUCGgCu -3'
miRNA:   3'- gUGCUgUGGU--CGCCGCUcAGgAGCgG- -5'
18779 3' -58.9 NC_004683.1 + 44921 0.66 0.533761
Target:  5'- gACGGuuCACCAGUGGCcAGcgCCU-GCCg -3'
miRNA:   3'- gUGCU--GUGGUCGCCGcUCa-GGAgCGG- -5'
18779 3' -58.9 NC_004683.1 + 374 0.66 0.523506
Target:  5'- -uCGACACCGGU-GCGGG-CCUgGCg -3'
miRNA:   3'- guGCUGUGGUCGcCGCUCaGGAgCGg -5'
18779 3' -58.9 NC_004683.1 + 24939 0.66 0.523506
Target:  5'- aACGugACgAccGCGGCGAcUUCUaCGCCg -3'
miRNA:   3'- gUGCugUGgU--CGCCGCUcAGGA-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 39808 0.66 0.523506
Target:  5'- -cCGGaGCCAGCGGUcgaugaguugGGGUCCgcgugagugcgcUCGCCg -3'
miRNA:   3'- guGCUgUGGUCGCCG----------CUCAGG------------AGCGG- -5'
18779 3' -58.9 NC_004683.1 + 2750 0.66 0.523506
Target:  5'- gCGCGGCgGCC-GCGGCGAG--CUCGgCg -3'
miRNA:   3'- -GUGCUG-UGGuCGCCGCUCagGAGCgG- -5'
18779 3' -58.9 NC_004683.1 + 6942 0.67 0.513328
Target:  5'- gGCGGCcgACUGGCGGCGGGcgguggugcagcUCgUCgGCCg -3'
miRNA:   3'- gUGCUG--UGGUCGCCGCUC------------AGgAG-CGG- -5'
18779 3' -58.9 NC_004683.1 + 239 0.67 0.513328
Target:  5'- cCGCGAUGCCGccgcugcugcccGCGGCGGGgCUggUCGCg -3'
miRNA:   3'- -GUGCUGUGGU------------CGCCGCUCaGG--AGCGg -5'
18779 3' -58.9 NC_004683.1 + 51730 0.67 0.513328
Target:  5'- cUACGGCcgcgACCAGUGccGCGccGcCCUCGCCg -3'
miRNA:   3'- -GUGCUG----UGGUCGC--CGCu-CaGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 1096 0.67 0.513328
Target:  5'- gCGCGugGCgCAGC-GCGAaccCCUCGUCg -3'
miRNA:   3'- -GUGCugUG-GUCGcCGCUca-GGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 16858 0.67 0.513328
Target:  5'- aCGCGaucgucgucGCGCCcgAGCcgGGCGAGgaCUCGCCg -3'
miRNA:   3'- -GUGC---------UGUGG--UCG--CCGCUCagGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 45533 0.67 0.506251
Target:  5'- cCACGGCAgCAGCGGCGccgcgacaaccacaaCCUCugGCCc -3'
miRNA:   3'- -GUGCUGUgGUCGCCGCuca------------GGAG--CGG- -5'
18779 3' -58.9 NC_004683.1 + 36193 0.67 0.503231
Target:  5'- gGCGugACCAGCGGagacggcaGGUCUcCGCg -3'
miRNA:   3'- gUGCugUGGUCGCCgc------UCAGGaGCGg -5'
18779 3' -58.9 NC_004683.1 + 3153 0.67 0.503231
Target:  5'- -uCGACGCCGGCGuGCuugcuGUugaCCUCGUCg -3'
miRNA:   3'- guGCUGUGGUCGC-CGcu---CA---GGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 52255 0.67 0.493222
Target:  5'- gCGCGGCACCaaGGCGcaCGAGcUCgaCGCCu -3'
miRNA:   3'- -GUGCUGUGG--UCGCc-GCUC-AGgaGCGG- -5'
18779 3' -58.9 NC_004683.1 + 37925 0.67 0.493222
Target:  5'- gACGACACCcaGGCGGCcGcGUCacaaGCCc -3'
miRNA:   3'- gUGCUGUGG--UCGCCG-CuCAGgag-CGG- -5'
18779 3' -58.9 NC_004683.1 + 48287 0.67 0.493222
Target:  5'- cCGCGuGCAUCAGCucacGGa-AGUCCUCGCg -3'
miRNA:   3'- -GUGC-UGUGGUCG----CCgcUCAGGAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.