miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18780 3' -53.8 NC_004683.1 + 51956 0.66 0.822644
Target:  5'- --gCCCGCaGUGGAUCCGCUgacgcgccucgagaaGGUGcUCg -3'
miRNA:   3'- agaGGGUG-CACUUAGGUGG---------------CCACuAG- -5'
18780 3' -53.8 NC_004683.1 + 19271 0.66 0.818936
Target:  5'- --cCCUACaaggGUGAGUCCucgccucaACCGGUGGUg -3'
miRNA:   3'- agaGGGUG----CACUUAGG--------UGGCCACUAg -5'
18780 3' -53.8 NC_004683.1 + 23161 0.66 0.809528
Target:  5'- --gCCCACGaGAG-CgCGCCGGUGAg- -3'
miRNA:   3'- agaGGGUGCaCUUaG-GUGGCCACUag -5'
18780 3' -53.8 NC_004683.1 + 24474 0.66 0.780218
Target:  5'- -aUCgCCGCgGUGGccucGUCgaagaCACCGGUGAUCg -3'
miRNA:   3'- agAG-GGUG-CACU----UAG-----GUGGCCACUAG- -5'
18780 3' -53.8 NC_004683.1 + 20622 0.67 0.743231
Target:  5'- --aCCCGcCGUugccgccggugCCGCCGGUGAUCg -3'
miRNA:   3'- agaGGGU-GCAcuua-------GGUGGCCACUAG- -5'
18780 3' -53.8 NC_004683.1 + 16269 0.68 0.674187
Target:  5'- uUCUCCCAcgcCGUGuucguaggcCCGCUGGUGAc- -3'
miRNA:   3'- -AGAGGGU---GCACuua------GGUGGCCACUag -5'
18780 3' -53.8 NC_004683.1 + 36598 0.69 0.652133
Target:  5'- uUCUUCCACGguuggcGAAUCUAUCGGggcuccuuuUGGUCu -3'
miRNA:   3'- -AGAGGGUGCa-----CUUAGGUGGCC---------ACUAG- -5'
18780 3' -53.8 NC_004683.1 + 8357 0.69 0.630005
Target:  5'- cCUCCUACGUcgccGucUCCugaCGGUGAUCg -3'
miRNA:   3'- aGAGGGUGCA----CuuAGGug-GCCACUAG- -5'
18780 3' -53.8 NC_004683.1 + 19222 0.69 0.618939
Target:  5'- -aUCCCugGUGGccgCCGCCGG--GUCg -3'
miRNA:   3'- agAGGGugCACUua-GGUGGCCacUAG- -5'
18780 3' -53.8 NC_004683.1 + 1386 0.69 0.607884
Target:  5'- aCUCCCAgGUGAuccGUCgACCGGccugcgGGUUg -3'
miRNA:   3'- aGAGGGUgCACU---UAGgUGGCCa-----CUAG- -5'
18780 3' -53.8 NC_004683.1 + 19563 0.72 0.479239
Target:  5'- -aUCCUugGUGAAcgCCugCGG-GAUCu -3'
miRNA:   3'- agAGGGugCACUUa-GGugGCCaCUAG- -5'
18780 3' -53.8 NC_004683.1 + 35155 0.72 0.459012
Target:  5'- -gUCCUGC--GAAUCCGCCGGUGAg- -3'
miRNA:   3'- agAGGGUGcaCUUAGGUGGCCACUag -5'
18780 3' -53.8 NC_004683.1 + 17484 1.11 0.001074
Target:  5'- aUCUCCCACGUGAAUCCACCGGUGAUCg -3'
miRNA:   3'- -AGAGGGUGCACUUAGGUGGCCACUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.