miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18780 5' -57.8 NC_004683.1 + 46605 0.75 0.166292
Target:  5'- gAGggCcGCGACGgcaAGGCCGCCGCGc -3'
miRNA:   3'- aUCuaGuCGCUGUac-UCCGGCGGCGC- -5'
18780 5' -57.8 NC_004683.1 + 44761 0.66 0.569168
Target:  5'- gAGAUCcaaaccuacgacccGGCGGCGgcGGGCCGCgugccCGCGa -3'
miRNA:   3'- aUCUAG--------------UCGCUGUacUCCGGCG-----GCGC- -5'
18780 5' -57.8 NC_004683.1 + 9824 0.66 0.569168
Target:  5'- aGGAUCGGCGccgagcCGacucgaaaaguucuUGAGGCgGUCGCGc -3'
miRNA:   3'- aUCUAGUCGCu-----GU--------------ACUCCGgCGGCGC- -5'
18780 5' -57.8 NC_004683.1 + 11691 0.66 0.529787
Target:  5'- cGGAUgaAGCGACggGAGcGCUGCaGCGg -3'
miRNA:   3'- aUCUAg-UCGCUGuaCUC-CGGCGgCGC- -5'
18780 5' -57.8 NC_004683.1 + 1738 0.67 0.488394
Target:  5'- gAGGUCGGCGAC--GAGGUgacaaaCGgCGCGg -3'
miRNA:   3'- aUCUAGUCGCUGuaCUCCG------GCgGCGC- -5'
18780 5' -57.8 NC_004683.1 + 9401 0.67 0.478281
Target:  5'- ---uUCGGCccgggGAGGCCGCCGCc -3'
miRNA:   3'- aucuAGUCGcuguaCUCCGGCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 25571 0.68 0.448584
Target:  5'- -cGGUCGGCaacGGCAcGGcGGCCGUCGCa -3'
miRNA:   3'- auCUAGUCG---CUGUaCU-CCGGCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 5154 0.68 0.429362
Target:  5'- cAGGgcgcCAGCGACAacgUGcGcGCCGCCGCc -3'
miRNA:   3'- aUCUa---GUCGCUGU---ACuC-CGGCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 52238 0.69 0.392422
Target:  5'- ---cUCGGCGACccG-GGCCGgCGCGg -3'
miRNA:   3'- aucuAGUCGCUGuaCuCCGGCgGCGC- -5'
18780 5' -57.8 NC_004683.1 + 19815 0.69 0.374743
Target:  5'- -cGAUCAGCGACAUcucgcAGGCCaucuUCGCGg -3'
miRNA:   3'- auCUAGUCGCUGUAc----UCCGGc---GGCGC- -5'
18780 5' -57.8 NC_004683.1 + 42308 0.73 0.228615
Target:  5'- gUGGAUC-GCGGCGUGGGuGuUCGCCGUGa -3'
miRNA:   3'- -AUCUAGuCGCUGUACUC-C-GGCGGCGC- -5'
18780 5' -57.8 NC_004683.1 + 43477 0.73 0.205899
Target:  5'- -cGAUCAGCcugcccuCGUgGGGGCUGCCGCGa -3'
miRNA:   3'- auCUAGUCGcu-----GUA-CUCCGGCGGCGC- -5'
18780 5' -57.8 NC_004683.1 + 41169 0.67 0.516181
Target:  5'- -uGG-CAGCGGCGcGGGGCCGCUuacuacguggugauGCGa -3'
miRNA:   3'- auCUaGUCGCUGUaCUCCGGCGG--------------CGC- -5'
18780 5' -57.8 NC_004683.1 + 40204 0.67 0.508913
Target:  5'- cAGAUUGGCGAUG-GucGCgGCCGCGu -3'
miRNA:   3'- aUCUAGUCGCUGUaCucCGgCGGCGC- -5'
18780 5' -57.8 NC_004683.1 + 3734 0.67 0.488394
Target:  5'- ----cCAGCGGCGgccGGGCCGCaCGCu -3'
miRNA:   3'- aucuaGUCGCUGUac-UCCGGCG-GCGc -5'
18780 5' -57.8 NC_004683.1 + 56993 0.68 0.458371
Target:  5'- cAGGUCAGaGGCucgcgGGGuGCCGCUGCa -3'
miRNA:   3'- aUCUAGUCgCUGua---CUC-CGGCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 6350 0.71 0.302068
Target:  5'- gGGGUCAGCcaccgagggGGCGUGGGGaUCGcCCGCGc -3'
miRNA:   3'- aUCUAGUCG---------CUGUACUCC-GGC-GGCGC- -5'
18780 5' -57.8 NC_004683.1 + 23813 0.72 0.247013
Target:  5'- gGGGUCGGCG-CcgGGGugguGCCGCCGCc -3'
miRNA:   3'- aUCUAGUCGCuGuaCUC----CGGCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 35028 0.73 0.234615
Target:  5'- ---uUCAGCuGACGgccGAGGCCGUCGCa -3'
miRNA:   3'- aucuAGUCG-CUGUa--CUCCGGCGGCGc -5'
18780 5' -57.8 NC_004683.1 + 16067 0.66 0.583188
Target:  5'- cGGGUCGGUGcccgaugccucCAUGAGGUCGgCGCc -3'
miRNA:   3'- aUCUAGUCGCu----------GUACUCCGGCgGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.